Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20246
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   104   2e-23
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    103   3e-23
03_06_0712 - 35683814-35684065,35685296-35685466                       27   3.5  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   4.6  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     27   4.6  
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858...    26   8.1  

>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  104 bits (250), Expect = 2e-23
 Identities = 47/96 (48%), Positives = 70/96 (72%), Gaps = 3/96 (3%)
 Frame = +2

Query: 11  VKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 181
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 182 AVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPLTXS 289
           A+RT  SHV+N+I GVTKG++YKM       P+  S
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINAS 96



 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = +1

Query: 259 VYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKM 360
           VYAHFPIN   T  N+ IEIRN LGEK +R+V M
Sbjct: 87  VYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120


>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  103 bits (248), Expect = 3e-23
 Identities = 46/97 (47%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
 Frame = +2

Query: 2   NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKEL 178
           ++ ++IP G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WFG+++ +
Sbjct: 7   SETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTM 66

Query: 179 AAVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPLTXS 289
           AA+RT  SHV+N+I GVTKG++YKM       P+  S
Sbjct: 67  AAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINAS 103



 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = +1

Query: 259 VYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKM 360
           VYAHFPIN   T  N+ IEIRN LGEK +R+V M
Sbjct: 94  VYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 127


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 80  VLKRNF-KHLAVDIRMVNPRLLKVE 151
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 44  KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 220
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S+V  M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201

Query: 221 K 223
           +
Sbjct: 202 E 202


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  IPXGLTVHVKSRLVTVKGPRGVLKRN 94
           +P G T H +S +  V+GPRG +  N
Sbjct: 61  LPRGATSHRESGISAVRGPRGRIGEN 86


>07_03_0446 -
           18285132-18285221,18285437-18285499,18285805-18285867,
           18286079-18286129,18286413-18286506,18286696-18286856,
           18287089-18287145,18287380-18287493,18287934-18287999,
           18288063-18288266,18289207-18289284,18289669-18289788,
           18290425-18290491,18290635-18290735,18290820-18290936,
           18292024-18292107,18292181-18292309,18292385-18292510,
           18292622-18292696,18292814-18292947,18293032-18293137,
           18293220-18293276,18294387-18294573,18295244-18295407,
           18296129-18296353,18296538-18296744,18297043-18297375,
           18297604-18297993
          Length = 1220

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 130 VYHANVNSQVFEVPFENSAGPFNCHQTRFH 41
           +Y   +  + F+  F N   PFN H   F+
Sbjct: 707 LYRRQITGKAFQASFRNRKIPFNIHGVAFY 736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,386,927
Number of Sequences: 37544
Number of extensions: 175422
Number of successful extensions: 358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)