Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20246
(368 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 103 6e-23
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 2.1
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 2.7
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 6.3
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05) 26 8.3
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 103 bits (246), Expect = 6e-23
Identities = 45/84 (53%), Positives = 63/84 (75%)
Frame = +2
Query: 2 NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 181
++ V IP + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF S+KELA
Sbjct: 563 SETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKELA 622
Query: 182 AVRTVCSHVENMIKGVTKGFQYKM 253
V+T+ +H+ENMIKGV G++YKM
Sbjct: 623 CVKTIITHIENMIKGVIYGYRYKM 646
Score = 54.4 bits (125), Expect = 3e-08
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +1
Query: 256 AVYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKMAP 366
AVYAHFPIN E +++E+RN LGEK +RRV+M P
Sbjct: 648 AVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 145 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 53
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 198 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 55
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -2
Query: 136 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 26
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 41 VKSRLVTVKGPRGVLKRNFKHL 106
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 235 RLPIQDAAVYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKM 360
+LP++ + +FP + V + GNS + G RV++
Sbjct: 424 KLPVRSCTINGNFPCDRVRSHGNSPCDCVRLYGNSACDRVRL 465
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 167 KKELAAVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPLTXSPLRVIQLLRYVT 325
K+ LAA + V + N+ KGVT+G ++T + +P RV+ + VT
Sbjct: 948 KRALAAAKVVKTERVNVAKGVTQGMPVTKGR-VVTQGMPITPGRVVTQGKVVT 999
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -2
Query: 136 TRVYHANVNSQVFEV-------PFENSAGPFNCHQTRFHMDRKP 26
TR YH NV VF V F S G + HQ + DR+P
Sbjct: 108 TRSYHKNVVKLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQP 151
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 25 RAYGPCEIASGDS*RAPRS--SQKELQTL 105
R Y PC I SG++ APR +KE++ L
Sbjct: 1372 RRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
Length = 739
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 94 VPFENS-AGPFNCHQTRFHMD--RKPVW-DFDFLI 2
+PF GP +C +TRF +D R P W FD+++
Sbjct: 6 IPFNALIVGPTSCGKTRFVVDRLRGPFWVKFDYIL 40
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,664
Number of Sequences: 59808
Number of extensions: 201545
Number of successful extensions: 543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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