Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20246
(368 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 109 8e-25
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.26
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 3.2
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 27 4.2
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 27 5.5
Z72509-4|CAA96648.3| 405|Caenorhabditis elegans Hypothetical pr... 26 7.3
U53147-5|AAA96116.1| 153|Caenorhabditis elegans Hypothetical pr... 26 9.7
AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical... 26 9.7
AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical... 26 9.7
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 109 bits (261), Expect = 8e-25
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = +2
Query: 2 NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 181
N V P G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG +KELA
Sbjct: 7 NDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELA 66
Query: 182 AVRTVCSHVENMIKGVTKGFQYKM 253
A+RTVCSH++NMIKGVT GF+YKM
Sbjct: 67 AIRTVCSHIKNMIKGVTVGFRYKM 90
Score = 50.4 bits (115), Expect = 4e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 256 AVYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKM 360
+VYAHFPIN +GN +EIRN LGEK +RRV +
Sbjct: 92 SVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPL 126
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.26
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 234 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 97
L P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 112 NSQVFEVPFENSAGPFNCHQTRFHMDR 32
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 112 NSQVFEVPFENSAGPFNCHQTRFHMDR 32
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 159 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 40
NH ++R+ M T K + TP G L +T + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 101 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMXLCM 265
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 266 LTSPLTXS 289
L T S
Sbjct: 421 LNFEATTS 428
>Z72509-4|CAA96648.3| 405|Caenorhabditis elegans Hypothetical
protein F32G8.4 protein.
Length = 405
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 262 TQXHLVLEAFSYSFNHVLYM*TDCPHG 182
T+ H+V + LYM TD PHG
Sbjct: 143 TERHMVASKLMTEEEYDLYMNTDAPHG 169
>U53147-5|AAA96116.1| 153|Caenorhabditis elegans Hypothetical
protein C01B7.5 protein.
Length = 153
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 133 RVYHANVNSQVFEVPFENSAGPFNC 59
++ V + E+P EN A FNC
Sbjct: 100 KIIQLKVRRRALEIPAENEASVFNC 124
>AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical
protein Y113G7B.5b protein.
Length = 327
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 182 AVRTVCSHVENMIKGVTKGFQY-KMXLCMLTSPL 280
AVR VC ++ N+I GF+Y K+ L S L
Sbjct: 42 AVRKVCRNLRNVIDDTDPGFKYVKVDLSRYASRL 75
>AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical
protein Y113G7B.5a protein.
Length = 312
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 182 AVRTVCSHVENMIKGVTKGFQY-KMXLCMLTSPL 280
AVR VC ++ N+I GF+Y K+ L S L
Sbjct: 42 AVRKVCRNLRNVIDDTDPGFKYVKVDLSRYASRL 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,966,754
Number of Sequences: 27780
Number of extensions: 151607
Number of successful extensions: 288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -