Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20246
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.38 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   0.66 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   3.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   8.1  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 193 CPHGGKLLFGSEPFLN 146
           CP    +LF S PFLN
Sbjct: 383 CPESDSILFVSSPFLN 398


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 188 RTVCSHVENMIKGVTKGFQY-KMXLCMLTSPLTXSP 292
           R VC  +EN I+G+   ++  K  + ++TS     P
Sbjct: 477 RAVCGRIENTIQGLPPPYRLNKPLMSLITSSEVRQP 512


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 145 LQETRVY-HANVNSQVFEVPFE 83
           LQ+ R+    N+N+Q+F+ P E
Sbjct: 59  LQKLRLLLQGNINNQLFQTPCE 80


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 266 LTSPLTXSPLRVIQLLR 316
           L +P+T +P  V QLLR
Sbjct: 156 LPTPVTPTPTTVQQLLR 172


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 93  FLLRTPRGPLTVTRRDFTWTVS 28
           + +  PR PL  +    TWT++
Sbjct: 54  YYIYNPRYPLPYSGSKCTWTIT 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,180
Number of Sequences: 438
Number of extensions: 1829
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)