Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20246
(368 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 92 9e-20
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 92 1e-19
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 92 1e-19
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 39 0.001
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ... 27 2.9
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 3.9
At1g03320.1 68414.m00311 hypothetical protein 26 6.8
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c... 26 9.0
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 92.3 bits (219), Expect = 9e-20
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Frame = +2
Query: 2 NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGS 166
++ + IP G+ + V ++++ V+GPRG L R+FKHL +D +++ R LK++ WFGS
Sbjct: 7 SETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGS 66
Query: 167 KKELAAVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPLTXS 289
+K A++RT SHV+N+I GVT+GF Y+M P+ S
Sbjct: 67 RKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINAS 107
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +1
Query: 259 VYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKM 360
VYAHFPIN N IEIRN LGEK +R+V+M
Sbjct: 98 VYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEM 131
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/101 (39%), Positives = 67/101 (66%), Gaps = 5/101 (4%)
Frame = +2
Query: 2 NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGS 166
++ + IP +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK++ WFG+
Sbjct: 7 SETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGT 66
Query: 167 KKELAAVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPLTXS 289
+K A++RT SHV+N+I GVT+GF+YKM P+ S
Sbjct: 67 RKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINAS 107
Score = 43.2 bits (97), Expect = 6e-05
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1
Query: 259 VYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKM 360
VYAHFPIN IEIRN LGEK +R+V+M
Sbjct: 98 VYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEM 131
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/101 (39%), Positives = 67/101 (66%), Gaps = 5/101 (4%)
Frame = +2
Query: 2 NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGS 166
++ + IP +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK++ WFG+
Sbjct: 7 SETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGT 66
Query: 167 KKELAAVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPLTXS 289
+K A++RT SHV+N+I GVT+GF+YKM P+ S
Sbjct: 67 RKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINAS 107
Score = 43.2 bits (97), Expect = 6e-05
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1
Query: 259 VYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKM 360
VYAHFPIN IEIRN LGEK +R+V+M
Sbjct: 98 VYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEM 131
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/85 (25%), Positives = 44/85 (51%)
Frame = +2
Query: 5 QKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 184
Q + +P +T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 49 QPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQM 107
Query: 185 VRTVCSHVENMIKGVTKGFQYKMXL 259
+ +NM+ GV+KGF+ K+ L
Sbjct: 108 HGLFRTLTDNMVVGVSKGFEKKLIL 132
>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 566
Score = 27.5 bits (58), Expect = 2.9
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -3
Query: 273 EVSIHSXILYWKPLVTPL----IMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTA 106
EV + I++ PL+T +M ST ASSF+D N T F++ +
Sbjct: 109 EVGFYGGIIF--PLLTMFPRIALMLSTGLSLSRDVASSFIDDNVGLTVGHTVFSLTIQWG 166
Query: 105 KCLKFLLRTPR 73
C+ F + PR
Sbjct: 167 ACVVFSITGPR 177
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 184 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 89
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At1g03320.1 68414.m00311 hypothetical protein
Length = 220
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 91 PFENSAGPFNCHQTRFHMDRKPV 23
P+ +AGPF QTR +MD P+
Sbjct: 183 PYMAAAGPFPYWQTRPYMDANPM 205
>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
contains Pfam domain PF01902: Domain of unknown function
Length = 715
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 98 KHLAVDIRMVNPRLLKVEKWFGS 166
KHL D+ + P LLK+++ +GS
Sbjct: 173 KHLGKDLAFMEPYLLKLKEKYGS 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,523,825
Number of Sequences: 28952
Number of extensions: 139221
Number of successful extensions: 336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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