Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20245
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   2.8  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    24   5.0  
SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|c...    24   6.6  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 214  GPHELLHRVEGGEVSRAGPREPSAL 140
            GP  L   ++GG VSR   R+ SAL
Sbjct: 1335 GPTSLSSMLKGGSVSRTPSRQNSAL 1359


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 131 CQL*RRQDRSHQYCNLHN 78
           C L R  D +HQYC + N
Sbjct: 158 CLLERLDDEAHQYCYVDN 175


>SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 109

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 137 MQCTGFPGPGSRHFATFNPMKEFVRPVHDSACPRRVRAFQVKHQRQYASDLEHEKRLNI 313
           +Q T  P    +H+AT   ++ F  P    AC    +A Q K Q+QYA   + + R  I
Sbjct: 33  LQLTILPS-AMQHYAT---LRNFTHP----ACSVNKQAEQGKEQQQYAMKSQFQFRSGI 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,805
Number of Sequences: 5004
Number of extensions: 18310
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)