Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20245
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0154 - 1775693-1775942,1776834-1777588 29 0.62
11_01_0617 - 4939108-4939259,4939584-4940259 29 0.81
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 29 0.81
04_01_0562 + 7212504-7212849,7212946-7213544 29 0.81
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409... 28 1.4
11_01_0612 + 4902197-4902929,4903443-4904071 28 1.4
09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219 28 1.4
06_03_0575 + 22431744-22432212,22432473-22433077 27 3.3
09_02_0609 - 11197630-11197977,11198631-11198702 27 4.3
11_01_0614 + 4911167-4911830,4911944-4911984 26 5.7
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 26 5.7
03_01_0517 - 3874834-3875196 26 7.6
01_07_0139 - 41385823-41386656 26 7.6
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 29.5 bits (63), Expect = 0.62
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 185 RWRSVASRAPGTQCTACYC 129
RWRSV+ P Q ++CYC
Sbjct: 250 RWRSVSMSKPQVQLSSCYC 268
>11_01_0617 - 4939108-4939259,4939584-4940259
Length = 275
Score = 29.1 bits (62), Expect = 0.81
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 205 ELLHRVEGGEVSRAGPREPSALHVTV 128
ELLH+ G E+S +GP +ALH V
Sbjct: 196 ELLHQQGGDELSYSGPAGQTALHAAV 221
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 29.1 bits (62), Expect = 0.81
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 191 PMKEFVRPVHDSACPRRVRAFQVKHQRQYASDLEHEK 301
PM++ PV A PR+ R F V R YA L+H++
Sbjct: 337 PMQQQRMPVVQQAAPRKQRVFTVTVSRAYA--LQHQR 371
>04_01_0562 + 7212504-7212849,7212946-7213544
Length = 314
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 236 RRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+R + KH R YA D E +RL +FR
Sbjct: 3 QRHERWMAKHGRAYADDAEKARRLEVFR 30
>12_01_1045 -
10739396-10739402,10739968-10740239,10740361-10740941,
10741566-10742586
Length = 626
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 205 ELLHRVEGGEVSRAGPREPSALHVTV 128
E+LH G +S +GP +ALH V
Sbjct: 310 EILHEKSNGNISYSGPHGQNALHAAV 335
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 205 ELLHRVEGGEVSRAGPREPSALHVTV 128
E LH+ G EVS +GP +ALH V
Sbjct: 215 EALHQQGGDEVSYSGPAGQTALHAAV 240
>09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219
Length = 215
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 205 ELLHRVEGGEVSRAGPREPSALHVTV 128
+LLH++ G +S +GP +ALH V
Sbjct: 160 KLLHQMTDGNLSYSGPNRQNALHAAV 185
>06_03_0575 + 22431744-22432212,22432473-22433077
Length = 357
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 221 DSACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
DSA R + H R Y LE +R +FR
Sbjct: 42 DSAMRERYEKWAADHGRTYKDSLEKARRFEVFR 74
>09_02_0609 - 11197630-11197977,11198631-11198702
Length = 139
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 217 DGPHELLHRVEGGEVSRAGP 158
DG ELLHRV E++RA P
Sbjct: 27 DGCRELLHRVSLTEITRAPP 46
>11_01_0614 + 4911167-4911830,4911944-4911984
Length = 234
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 205 ELLHRVEGGEVSRAGPREPSALHVTV 128
E LH+ +G E+S AGP +ALH V
Sbjct: 193 EALHQ-QGDELSYAGPAGQTALHAAV 217
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 113 DVFKVDSNMQCTGF---PGPGSRHFATFNPMKEFVRPVHDSA 229
D+F+ + + + F P RH NP+K+ + P+HD A
Sbjct: 752 DIFRREDSEKLQDFLRKHAPEFRHIHC-NPVKQVIHPIHDQA 792
>03_01_0517 - 3874834-3875196
Length = 120
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 301 LLVLQVARVLPLVFDLKRSNSSWTCAVVDGPHE 203
L++LQV R LV+DL S +VV G E
Sbjct: 39 LVILQVGRFSVLVYDLSHRKSLVFVSVVSGETE 71
>01_07_0139 - 41385823-41386656
Length = 277
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 294 CSRSLAYCLWCLT*NARTRRGHALSWTGRTNSFIGLKVA 178
C + A C WCL + RG +GR S+ G A
Sbjct: 239 CRSAAATCSWCLGCTSARGRGSPWRTSGRRPSWWGAAAA 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,266,641
Number of Sequences: 37544
Number of extensions: 146150
Number of successful extensions: 416
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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