Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20245
(320 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 4e-11
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 6e-11
SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09) 34 0.030
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.090
SB_28340| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.090
SB_54627| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_49960| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.36
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8) 30 0.48
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 0.64
SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06) 28 1.5
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 28 1.9
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_37788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_26320| Best HMM Match : PGM_PMM_IV (HMM E-Value=10) 27 2.6
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08) 27 3.4
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57) 27 4.5
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_15313| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_1137| Best HMM Match : CC (HMM E-Value=2) 27 4.5
SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5) 26 5.9
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.9
SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.9
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 63.3 bits (147), Expect = 4e-11
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = +2
Query: 5 PIPVRYEMKGFNSLLGSXXXXXXXXXXXXNIDEIDPDVFKVDSNMQCTGFPGPGSRHFAT 184
P PVRYEMKG+++LL S + D D F++ +C RHF +
Sbjct: 182 PRPVRYEMKGYDNLLASYYDNYVLEYISFEEWKPDLDRFELPKGSECYNLSHSFDRHFVS 241
Query: 185 FNPMKEFVRPVH-DSACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
NPM+EF+ D A R R +Q +H +QY S+ E KR +IFR
Sbjct: 242 -NPMQEFMSYGKVDFAIERMYRKYQGQHNKQYDSEHEVSKRKHIFR 286
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 62.9 bits (146), Expect = 6e-11
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +2
Query: 5 PIPVRYEMKGFNSLLGSXXXXXXXXXXXXNIDEIDPDVFKVDSNMQCTGFPGPGSRHFAT 184
P P+ YEM GF+ L+GS + +VF+ + CTGFPGPG +
Sbjct: 475 PAPIHYEMLGFDDLIGSHYDQYELDYSNYSPQAPPEEVFQTPEGLVCTGFPGPGDDDEKS 534
Query: 185 F--NPMKEFVRPVHDSACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
NPM+EFV + R + KH++ Y + EH R F+
Sbjct: 535 IINNPMQEFVEMHNVEKVHRVFDKYVKKHKKNYKDNKEHHTRREHFK 581
>SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)
Length = 818
Score = 33.9 bits (74), Expect = 0.030
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +2
Query: 5 PIPVRYEMKGFNSLLGSXXXXXXXXXXXXNIDEIDPDVFKVDS---NMQCTGFPG--PGS 169
P+P+R EM G++++L S N D +F + + C GS
Sbjct: 595 PLPMRLEMDGYDTVLVSYYDSYVIDNHTFNKCTYDKGIFDIPHLRRDKWCWDISKFYHGS 654
Query: 170 RHFA-TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
A + NPM EF F+ +H + Y D EH +R +IFR
Sbjct: 655 EGAAMSINPMPEFTSLGQSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 706
>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 32.3 bits (70), Expect = 0.090
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 TFNPMKEFVRPVHDS-ACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+ NPM EF H S F+ +H + Y D EH +R +IFR
Sbjct: 23 SINPMAEFTSLGHSSDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 69
>SB_28340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 32.3 bits (70), Expect = 0.090
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+ NPM EF H FQ +H + Y D EH +R +IFR
Sbjct: 23 SINPMAEFTSLGHSRDLVDDDFDEFQQQHDKVYEDDSEHRRRKHIFR 69
>SB_54627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+ NPM EF H F+ +H + Y D EH +R +IFR
Sbjct: 26 SINPMAEFTSLGHSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 72
>SB_49960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+ NPM EF H F+ +H + Y D EH +R +IFR
Sbjct: 23 SINPMAEFTSLGHSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 69
>SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+ NPM EF H F+ +H + Y D EH +R +IFR
Sbjct: 23 SINPMAEFTSLGHSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 69
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+ NPM EF H F+ +H + Y D EH +R +IFR
Sbjct: 1173 SINPMAEFTSLGHSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 1219
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 251 FQVKHQRQYASDLEHEKRLNIFR 319
F+ ++++Y S EHEKR +I+R
Sbjct: 429 FKASYRKRYPSAHEHEKRKDIYR 451
>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 30.3 bits (65), Expect = 0.36
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Frame = +2
Query: 5 PIPVRYEMKGFNSLLGSXXXXXXXXXXXXNIDEIDPDVFKVDS---NMQCTGFP--GPGS 169
P+ +R EM G++++L S N D +F + + C GS
Sbjct: 57 PLLMRLEMDGYDTVLVSYYDSYVIDYHTFNNWTYDKGIFDIPHLRHDRWCWDISKFSHGS 116
Query: 170 RHFA-TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
A + NPM EF F+ +H + Y D EH +R +IFR
Sbjct: 117 EGAAMSINPMAEFTSLGQSRELVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 168
>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
Length = 234
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 182 TFNPMKEFVRPVHD-SACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
T NPM EF + F+ +H + Y D EH +R +IFR
Sbjct: 23 TINPMAEFTSLGYSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 69
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 29.5 bits (63), Expect = 0.64
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 237 RGHALSWTGRTNSFIGLKVAKCREPGPGNPVHC 139
R AL+W+GR +G + +CR G +P+ C
Sbjct: 1998 RMQALAWSGRL--VVGAFIPRCRSDGSYDPIQC 2028
>SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 248 AFQVKHQRQYASDLEHEKRLNIFR 319
AF+ ++++Y S EHEKR +I+R
Sbjct: 300 AFKASYRKRYPSAHEHEKRKDIYR 323
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 11 PVRYEMKGFNSLLGS 55
PVRYEM G+++LL S
Sbjct: 40 PVRYEMMGYDTLLSS 54
>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
Length = 385
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 182 TFNPMKEFVRPVHDSACP--RRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+ NPM EF + S P F+ +H + Y D EH +R +IFR
Sbjct: 23 SINPMAEFTS-LGQSRDPVDDDFDEFRQQHDKVYEDDSEHRRRKHIFR 69
>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 1616
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 314 RCSASSRAPGRSRTASGV*LETLELVVDMRCRGRAARTPSSG*RWRSVASRAPGTQCTAC 135
RC+A++R PG R A+G + RCR R +G RW + + P + +
Sbjct: 1244 RCAAAARGPGAERAAAGT------ALARRRCRLR------NGKRWHAFGTHTPAPESNSA 1291
Query: 134 Y 132
+
Sbjct: 1292 W 1292
>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 251 FQVKHQRQYASDLEHEKRLNIFR 319
F+ +H + Y D EH +R +IFR
Sbjct: 489 FRQQHDKVYEDDSEHRRRKHIFR 511
>SB_37788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 251 FQVKHQRQYASDLEHEKRLNIFR 319
F+ +H + Y D EH +R +IFR
Sbjct: 8 FRQQHDKVYEDDSEHRRRKHIFR 30
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 251 FQVKHQRQYASDLEHEKRLNIFR 319
F+ +H + Y D EH +R +IFR
Sbjct: 218 FRQQHDKVYEDDSEHRRRKHIFR 240
>SB_26320| Best HMM Match : PGM_PMM_IV (HMM E-Value=10)
Length = 237
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 173 HFATFNPMKEFVRPVHDSAC 232
HFAT++ +K +R V DS+C
Sbjct: 62 HFATYHNIKHTIRVVFDSSC 81
>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
Length = 1555
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Frame = +2
Query: 5 PIPVRYEMKGFNSLLGSXXXXXXXXXXXXNIDEIDPDVFKVD---SNMQCTGFP--GPGS 169
P+P+R EM G+N++L S N D +F + + C GS
Sbjct: 1117 PLPMRLEMDGYNTVLVSYYDSYVIDYHTFNKWTYDKGIFDIQHLRHDKWCWDISKLSHGS 1176
Query: 170 RHFA-TFNPMKEFVR 211
A + NPM EF R
Sbjct: 1177 EGAAMSINPMAEFTR 1191
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 250 RSNSSWTCAVVDGPHEL 200
+ N+SW C + GPH L
Sbjct: 462 QGNASWKCVICSGPHGL 478
>SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)
Length = 427
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 173 HFATFNPMKEFVRPVHDSAC 232
HFAT++ K +R V DS+C
Sbjct: 161 HFATYHNTKHTIRVVFDSSC 180
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 173 HFATFNPMKEFVRPVHDSAC 232
HFAT++ K +R V DS+C
Sbjct: 945 HFATYHNTKHTIRVVFDSSC 964
>SB_15313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 173 HFATFNPMKEFVRPVHDSAC 232
HFAT++ K +R V DS+C
Sbjct: 372 HFATYHNTKHTIRVVFDSSC 391
>SB_1137| Best HMM Match : CC (HMM E-Value=2)
Length = 410
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 218 HDSACPRRVRAFQVKHQRQYASDLEHEKRLNIFR 319
+D R ++ KH + Y + EH++R +I++
Sbjct: 306 YDRELARLYHEYKAKHGKHYRTHAEHDQRKHIYK 339
>SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5)
Length = 218
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 200 EFVRPVHDSACPRRVRAFQVKHQRQYASDLEHEK 301
+F+R HDS R+R ++H + S E E+
Sbjct: 40 KFLRDKHDSVLEERLRNTAIRHLEEIISTEEQER 73
>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 200 EFVRPVHDSACPRRVRAFQVKHQRQYASDLEHEK 301
+F+R HDS R+R ++H + S E E+
Sbjct: 423 KFLRDKHDSVLEERLRNTAIRHLEEIISTEEQER 456
>SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -1
Query: 251 TLELVVDMRCRGRAART--PSSG*RWRSVASRAPGTQCTACYCQL*RRQDRSHQYCNLHN 78
+L L R G ART P + + +R P T T Y L RR CN +
Sbjct: 5 SLGLTDPPRLSGGLARTNMPKAPFNVEHLKARLPATPSTRSYDSLQRRAPEGTTVCNAEH 64
Query: 77 P 75
P
Sbjct: 65 P 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,465,619
Number of Sequences: 59808
Number of extensions: 166319
Number of successful extensions: 443
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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