Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20245
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical pr...    29   0.56 
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    28   1.3  
Z81038-11|CAB02761.1|  230|Caenorhabditis elegans Hypothetical p...    26   7.0  
U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical pr...    25   9.2  

>Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical
           protein F47H4.7 protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = +2

Query: 134 NMQCTGFPGPGSRH------FATFNPMKEFVRPVHDSACPRRVR-AFQVKHQRQ 274
           N Q    PGP +RH      F  +N +KE ++ + D   P +   A Q K  R+
Sbjct: 141 NSQSANSPGPSARHHDKDDDFPAYNQLKELIQKLKDKQTPAKAEPAKQAKINRK 194


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 GFPGPGSRHFATFNPMKEFVRPVHDSACPRRVRA 250
           G+P  G+  ++TF+P+ ++ +P  +     R+ A
Sbjct: 322 GYPSAGAHDYSTFHPLLQYAQPRGEDTLTHRLLA 355


>Z81038-11|CAB02761.1|  230|Caenorhabditis elegans Hypothetical
           protein C25A1.2 protein.
          Length = 230

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 119 RRQDRSHQYCNLHNPDSNDRSGSPGAN 39
           +R+ R H    + + DS+D  GSPG++
Sbjct: 171 QRKVRRHMGLQVEDGDSSDEEGSPGSD 197


>U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical
           protein C03G6.12 protein.
          Length = 430

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 137 MQCTGFPGPGSRHFATFNPMKEFVRPVHDS 226
           +QC G P   S HF  F+ + E ++ + D+
Sbjct: 136 IQCDGNPKKDSSHFRDFDSIDEKIKNIIDT 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,703,250
Number of Sequences: 27780
Number of extensions: 115562
Number of successful extensions: 293
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)