Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20244
         (357 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   2.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   6.6  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 101 EFLSGVTMVHPNPQTAVAKATPI 33
           E++S V    P PQ    +ATP+
Sbjct: 378 EYISVVNPESPYPQIGSERATPV 400


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 92  SGVTMVHPNPQTAVAKATPIPVFP 21
           S  TM  P    A A+  P P FP
Sbjct: 62  SATTMGGPRYGRAAAQGMPYPRFP 85


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 217 EDPNAISCDQ 246
           +DPN ++CD+
Sbjct: 908 KDPNEVTCDE 917


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,100
Number of Sequences: 336
Number of extensions: 1133
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)