Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20244
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 57 9e-10
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 45 3e-06
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 30 0.12
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 25 3.5
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 4.6
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 24 6.1
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 8.0
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 24 8.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 8.0
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 56.8 bits (131), Expect = 9e-10
Identities = 32/82 (39%), Positives = 44/82 (53%)
Frame = +1
Query: 4 IHEPTSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISLLGAEVVXTPAMAPWESSE 183
I E T+GNTGIG+A G C I P+ S K+ T+ LGAEV P +AP+ +
Sbjct: 77 IVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVP-VAPFSNPL 135
Query: 184 HFLSVAKRRLLEDPNAISCDQY 249
++ A+R PNA DQ+
Sbjct: 136 NYNHQARRHAESTPNASWTDQF 157
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 45.2 bits (102), Expect = 3e-06
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 4 IHEPTSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISLLGAEVV-XTPAMAPWESS 180
++E T+G+TGI +A+ G I P S EK + LLGA V TP AP
Sbjct: 108 VYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTP--APIVDP 165
Query: 181 EHFLSVAKR 207
HF++ A+R
Sbjct: 166 NHFVNTARR 174
Score = 25.4 bits (53), Expect = 2.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 249 QEDVNPRTHYEYTAEEILALXPD-VDMIVMGSGTGGT 356
+ N + H+ T EI +D + GSGTGGT
Sbjct: 196 ENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGT 232
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 29.9 bits (64), Expect = 0.12
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 16 TSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISLLGAEVV 147
++GN GVA + G TIV P + K + LGA V+
Sbjct: 168 SAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVL 211
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 237 LRSVQEDVNPRTHYEYTAEEILALXPDV 320
LR ++D+ R EY A+ I PDV
Sbjct: 276 LREPEDDIENRQFSEYVADRIRKSFPDV 303
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 4.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +1
Query: 4 IHEPTSGNTGIG-VALATAVC---GXGCTIVTPDKNSDEKM 114
IH T G G G + A C G GC ++ D N D+K+
Sbjct: 142 IHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDINPDKKL 182
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 205 RRLLEDPNAISCDQYKKMLILELITNTLLKKY 300
RRLLE + CD K+LI+ ++NT+ ++
Sbjct: 910 RRLLEH---VCCDLTSKLLIVVSLSNTITPEF 938
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 23.8 bits (49), Expect = 8.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 134 PSKLIVLIFSSEFLSGVTMVHPNPQTAVAKATPIPVFPDVGS 9
PS+ + +S + T+ PNP A ATP+ +V +
Sbjct: 257 PSRKEIAFSNSSTPTDQTLRPPNPPAANGNATPVTAVNNVSA 298
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 187 FLSVAKRRLLEDPNAISCDQ 246
+LS KRR +EDP C Q
Sbjct: 590 YLSKQKRRPVEDPEVRHCSQ 609
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 74 HPNPQTAVAKATPIPVFPDVGS 9
HPNP T VA +P+ + S
Sbjct: 953 HPNPYTPVAPQSPVAAASRISS 974
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,904
Number of Sequences: 5004
Number of extensions: 21655
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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