Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20244
(357 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 5e-17
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064) 64 2e-11
SB_18116| Best HMM Match : PALP (HMM E-Value=0) 64 2e-11
SB_44496| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.052
SB_2970| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.21
SB_38968| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=0.78) 28 1.9
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_55691| Best HMM Match : Ribosomal_L10e (HMM E-Value=6.5) 27 4.5
SB_11841| Best HMM Match : Ras (HMM E-Value=0) 27 5.9
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39) 27 5.9
SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28) 26 7.8
>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 83.4 bits (197), Expect = 5e-17
Identities = 42/81 (51%), Positives = 54/81 (66%)
Frame = +1
Query: 10 EPTSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISLLGAEVVXTPAMAPWESSEHF 189
EPTSGNTGIG+ALA AV G C IV P+K S+EK+ + LGAE+V TP A ++S E
Sbjct: 68 EPTSGNTGIGLALAAAVKGYRCIIVMPEKMSNEKVDVLRALGAEIVRTPTEAKFDSPESH 127
Query: 190 LSVAKRRLLEDPNAISCDQYK 252
+ VA+R E N+ DQY+
Sbjct: 128 IGVAQRLNAEIANSHILDQYR 148
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 231 NILRSVQEDVNPRTHYEYTAEEILALXPD-VDMIVMGSGTGGT 356
+IL + NP HY+ TA+EIL VDM+V+G+GTGGT
Sbjct: 142 HILDQYRNPGNPLAHYDSTADEILQQCDGKVDMVVLGAGTGGT 184
>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
Length = 129
Score = 64.5 bits (150), Expect = 2e-11
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +1
Query: 10 EPTSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISLLGAEVVXTPAMAPWESSEHF 189
EPTSGNTGI +ALA+AV G C IV +K S +K T LG V PA A ++S E
Sbjct: 51 EPTSGNTGIALALASAVKGYRCVIVMSEKMSSDKADTQKALGGICVRAPAEAKFDSPEST 110
Query: 190 LSVAKRRLLEDPNAISCDQ 246
+ +A++ E PN+ +Q
Sbjct: 111 IRLAQQLQKEIPNSYVLNQ 129
>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
Length = 470
Score = 64.5 bits (150), Expect = 2e-11
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +1
Query: 10 EPTSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISLLGAEVVXTPAMAPWESSEHF 189
EPTSGNTGI +ALA+AV G C IV +K S +K T LG V PA A ++S E
Sbjct: 51 EPTSGNTGIALALASAVKGYRCVIVMSEKMSSDKADTQKALGGICVRAPAEAKFDSPEST 110
Query: 190 LSVAKRRLLEDPNAISCDQ 246
+ +A++ E PN+ +Q
Sbjct: 111 IRLAQQLQKEIPNSYVLNQ 129
>SB_44496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 33.5 bits (73), Expect = 0.052
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 34 IGVALATAVCGXGCTIVTPDKNSDEK 111
IG+ALA AV G C IV P+K S+EK
Sbjct: 2 IGLALAAAVKGYRCIIVMPEKMSNEK 27
>SB_2970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 261 NPRTHYEYTAEEILALXP-DVDMIVMGSGTGGT 356
N R H+E T EI +D +V G+GTGGT
Sbjct: 50 NRRAHFETTGPEIWQQTDGQIDAVVFGTGTGGT 82
>SB_38968| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=0.78)
Length = 152
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 163 APWESSEHFLSVAKRRLLEDPNAISCDQYKKM 258
A +E SE + S+ RR+L + + I CDQ+K +
Sbjct: 34 ACYEISEGYGSLQNRRVLGEVSMIFCDQHKSL 65
>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1181
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 163 APWESSEHFLSVAKRRLLEDPNAISCDQYKKM 258
A +E SE + S+ RR+L + + I CDQ+K +
Sbjct: 912 ACYEISEGYGSLQNRRVLGEVSMIFCDQHKSL 943
>SB_55691| Best HMM Match : Ribosomal_L10e (HMM E-Value=6.5)
Length = 189
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 7 HEPTSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISL 129
+ +SGN+ +A A AVC ++ P+K +++ T+SL
Sbjct: 65 YSQSSGNSPTMLAGAGAVCTKLLSVRAPEKKPHQQVETLSL 105
>SB_11841| Best HMM Match : Ras (HMM E-Value=0)
Length = 523
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 270 THYEYTAEEILALXPDVDMIVMGSG 344
THY TA ++ L P+VD + G G
Sbjct: 204 THYIQTAHKLRELAPNVDKVYPGHG 228
>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
Length = 387
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +3
Query: 279 EYTAEEIL--ALXPDVDMIVMGSGTGG 353
E T +++L +L +VD++V+GSG GG
Sbjct: 20 EITRQKVLHFSLLGEVDLVVIGSGPGG 46
>SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28)
Length = 444
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 113 IFSSEF-LSGVTMVHPNPQTAVAKATP 36
IF+ F LS + ++HPNP T A+ P
Sbjct: 19 IFNQPFILSFIHLLHPNPATTSAQTCP 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,913,514
Number of Sequences: 59808
Number of extensions: 156455
Number of successful extensions: 636
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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