Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20244
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    95   3e-22
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 94.7 bits (225), Expect = 3e-22
 Identities = 46/82 (56%), Positives = 58/82 (70%)
 Frame = +1

Query: 4   IHEPTSGNTGIGVALATAVCGXGCTIVTPDKNSDEKMSTISLLGAEVVXTPAMAPWESSE 183
           I EPTSGNTGIG+A+A AV G  C IV P+K SDEK+ST+  LGA+++ TP  A W S E
Sbjct: 101 IIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTLYALGAKIIRTPTEASWHSPE 160

Query: 184 HFLSVAKRRLLEDPNAISCDQY 249
             +SVA++   E PN+I  DQY
Sbjct: 161 AHISVAQKLQKEIPNSIILDQY 182



 Score = 32.7 bits (71), Expect = 0.001
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 261 NPRTHYEYTAEEILALXPD-VDMIVMGSGTGGT 356
           NP  HY+ TA EI       +D +V G+GTGGT
Sbjct: 187 NPLAHYDQTAIEIWKQCEGKIDYLVAGAGTGGT 219


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 222 SERNILRSVQEDVNPRTHYEYTAEEIL 302
           S+  ++ S   +  PRTHY++  E ++
Sbjct: 30  SKYQLITSTTLNWLPRTHYDHLKEIVI 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,488
Number of Sequences: 438
Number of extensions: 1408
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)