Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20243
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    28   0.84 
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   4.5  
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 5   GIPVLYEELKSRNMNMRYKSAXL*GGLLYYQISIYTNF 118
           G+P LY ++ +RN    Y +  L G L++Y     T+F
Sbjct: 220 GLPTLYGKIGNRNQTRIYYTLLLLGVLIFYMTWGITDF 257


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 72  YKEDYCIIKYPFTLIFSMRF 131
           + +++C++KYP+ L  + +F
Sbjct: 5   WAKEFCVLKYPYKLFITHKF 24


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 92  YQISIYTNFLYALPLIPFDV-FRVSVLLMYYRA*FRNSLCINKST 223
           + +   TNF+ +LP   F + F VS+L +Y R   RN +   K T
Sbjct: 65  FPLIFVTNFITSLPNFQFPLFFFVSLLHLYRRP--RNQISTRKYT 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,170
Number of Sequences: 5004
Number of extensions: 30645
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)