Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20243
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089673-1|AAL90411.1|  227|Drosophila melanogaster RH45888p pro...    28   7.6  
AE014297-227|AAF52042.1|  227|Drosophila melanogaster CG1161-PA,...    28   7.6  
AE014297-226|AAX52934.1|  263|Drosophila melanogaster CG1161-PB,...    28   7.6  

>AY089673-1|AAL90411.1|  227|Drosophila melanogaster RH45888p
           protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 234 THAARGV*VINTYSNTMLWVVXN*VSYMLF-VCIXKLXNVR 353
           +H AR   +I      ++W++   V YMLF +C+  L N R
Sbjct: 124 SHVARNTTLIKVVVIIVIWIISILVIYMLFLMCLDPLLNKR 164


>AE014297-227|AAF52042.1|  227|Drosophila melanogaster CG1161-PA,
           isoform A protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 234 THAARGV*VINTYSNTMLWVVXN*VSYMLF-VCIXKLXNVR 353
           +H AR   +I      ++W++   V YMLF +C+  L N R
Sbjct: 124 SHVARNTTLIKVVVIIVIWIISILVIYMLFLMCLDPLLNKR 164


>AE014297-226|AAX52934.1|  263|Drosophila melanogaster CG1161-PB,
           isoform B protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 234 THAARGV*VINTYSNTMLWVVXN*VSYMLF-VCIXKLXNVR 353
           +H AR   +I      ++W++   V YMLF +C+  L N R
Sbjct: 124 SHVARNTTLIKVVVIIVIWIISILVIYMLFLMCLDPLLNKR 164


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,611
Number of Sequences: 53049
Number of extensions: 295173
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)