Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20243
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-12|CAB04422.2|  363|Caenorhabditis elegans Hypothetical p...    27   7.0  
AL023821-3|CAA19439.2|  363|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    27   9.3  

>Z81542-12|CAB04422.2|  363|Caenorhabditis elegans Hypothetical
           protein Y102A5B.1 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 308 NLIXNYPQHCIGICIYYLNPSSRMG 234
           N    YP +  G CIYY+   S+ G
Sbjct: 197 NFAKTYPNNVTGGCIYYMTTGSQAG 221


>AL023821-3|CAA19439.2|  363|Caenorhabditis elegans Hypothetical
           protein Y102A5B.1 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 308 NLIXNYPQHCIGICIYYLNPSSRMG 234
           N    YP +  G CIYY+   S+ G
Sbjct: 197 NFAKTYPNNVTGGCIYYMTTGSQAG 221


>Z80223-4|CAB02318.1|  229|Caenorhabditis elegans Hypothetical
           protein F26D10.11 protein.
          Length = 229

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 9   YPYYTRN*NRVI*ICVIRAPXYKEDYCIIKYPFTLIFSMRFH*SLLTCLG 158
           YPY   N  RV  IC   +  Y+   C I++P+ L   + F    L CLG
Sbjct: 131 YPYGWEN-PRVREIC--ESKKYQLGLCQIRWPYLLAMVLVFDQLCLCCLG 177


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 33  NRVI*ICVIRAPXYKEDYCIIKYPFTLIFSM 125
           NR   IC++R+  + +   II + FTL+F++
Sbjct: 110 NRWAVICILRSSMFTKRNLIICFSFTLVFAV 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,925
Number of Sequences: 27780
Number of extensions: 162830
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)