Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20239
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 30 0.26
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.60
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.0
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 3.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 3.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 3.2
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera... 26 4.2
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 5.6
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 5.6
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 5.6
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 7.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 7.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.3
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.7
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +1
Query: 328 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 498
T N I++ + + + HEE + ELR++++++++ E+ ++ E+Y+
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQ 141
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 0.60
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 59 AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEE 238
A+ ETKST ++ GG A +A P +P P +P P+ E +++
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPAT 923
Query: 239 RRRS 250
R +S
Sbjct: 924 RPKS 927
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 8 SSDAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 130
S D L+ L R + +E E ++ +C E K L YE
Sbjct: 2534 SLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 14 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 106
DA +FRS+CRL V + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 322 EQTNNFIVATKEA-LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE 489
+Q VA ++A +E K E + + + SR+K + +E TRL + Q E
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDIE 516
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 355 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ 477
E L K+++ ++++ INEL R+K + V + T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570
>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
formyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 113 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAE 235
G + + VI A G P+ + T S+E ++EK+ AAE
Sbjct: 151 GAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHAAE 191
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 182 PEKTPSVEEIQEKLKAAEERRRSLE 256
PE TP+VE++ E L E R SL+
Sbjct: 301 PESTPAVEKVSENL--GSETRESLQ 323
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 167 RRADSPEKTPSVEEIQEKLK 226
RRAD PE+TPS ++ L+
Sbjct: 21 RRADRPEETPSSSVYEQNLR 40
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 319 SEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 498
SEQT A + + K E E L++ KD+ ++K LE++ + K
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450
Query: 499 AI 504
I
Sbjct: 451 EI 452
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 346 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 483
A +E + ++E +EA +NE R L+ LEG ++ L++ +
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDS 50
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 131 VILAEPVGVPVPRRADSPEKTPSVEEIQEKL 223
V L +P+ P P A+S + T S E++ +L
Sbjct: 182 VSLPQPIAAPAPPSAESSKSTISDEDVAWQL 212
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 340 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEK 456
I+A + L A+ E +E+ E +NE R+K+ E +K
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQK 1630
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 123 ARPPFDISWQRISVDLVSTSMASTFNRQRLRNS 25
A PF ISW + S A+TF++ +L N+
Sbjct: 469 ASEPFSISWPQNPSISGSVHSATTFDKAQLSNT 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,811
Number of Sequences: 5004
Number of extensions: 24909
Number of successful extensions: 123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -