Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20239
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 34 0.065
11_06_0289 - 21969248-21973516 33 0.15
11_06_0185 + 21018045-21022307 33 0.15
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 31 0.80
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 29 1.8
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 3.2
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 28 5.6
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 28 5.6
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 27 7.5
05_01_0242 + 1804183-1806096 27 7.5
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 7.5
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 27 9.9
07_03_1364 + 26044559-26044672,26045732-26046334 27 9.9
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 27 9.9
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 9.9
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 27 9.9
02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250 27 9.9
>07_01_0463 + 3502708-3503535
Length = 275
Score = 34.3 bits (75), Expect = 0.065
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +1
Query: 322 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE-V 492
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++ A+ +
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTL 238
Query: 493 YKAIE 507
K IE
Sbjct: 239 EKGIE 243
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 355 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 504
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 355 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 504
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 158 PVPRRADSPE-KTPSVEEIQEKLKAAEERRRSLEL 259
P PR ++ KTP + E++E +++ +ER ++LEL
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLEL 177
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 291 QDRGGVPHPQRADE*LHRRHQGGARRQDGDPRGKTRGLHQRAALPSQG 434
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAEDD--KRDEGDGERDAREDKERREGDSQG 77
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 316 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 450
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 367 AKMETHEEKREAYINELRS--RLKDHLEGVEKTRLTLEQQTAE 489
A+ E++ K + N S L++H++ +EKT +T Q++ E
Sbjct: 83 AEAESYASKEQVRYNRFLSPRALREHIKNIEKTAVTALQESPE 125
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +1
Query: 352 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEV 510
KEA A++ EE+++ + E L++ + +E ++ + TAEV++ +++
Sbjct: 259 KEAEKAEVLKEEERKDMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQL 311
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 176 DSPEKTPSVEEIQEKLKAAEERRRSLE 256
+SPE P + E+ + L+ EE RRS+E
Sbjct: 515 NSPELRPKMSEVTQILQENEEDRRSVE 541
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 499 PCTLPRSAVPGSTWSSQRPQDDP*DGSAAR 410
P T R+ +P ++RP+ DP G +AR
Sbjct: 23 PATSHRNKIPADPSRTERPRPDPGSGDSAR 52
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 331 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDH 438
N+ I EALD ++TH E + + S LKDH
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH 403
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +1
Query: 325 QTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 504
++N + A +E L +K+ +E +EL S+L +H+EG+ T+E + A+ KAI
Sbjct: 2166 KSNQKVSALEEQLASKINELKEV-SVEKDELTSKL-NHIEGIS---YTMEDELADKSKAI 2220
Query: 505 E 507
E
Sbjct: 2221 E 2221
>07_03_1364 + 26044559-26044672,26045732-26046334
Length = 238
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 292 WPSSEQWRPSY 260
WPS E+WRP Y
Sbjct: 68 WPSYEEWRPEY 78
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 14 DAIQLFRSLCR--LKVEAMEVETKSTEIRCQEMSKG 115
DA+ LFR+LC+ +K E+ EV TK T + E+ +G
Sbjct: 274 DALLLFRTLCKMSMKEESDEVATK-TRLLSLELLQG 308
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 267 GRHCSEDGQD---RGGVPHPQRADE*LHRRHQGGARRQDGDP 383
GRH GQ RGG PH QRA R GG Q G P
Sbjct: 16 GRHGIAGGQGHLPRGGAPHRQRAAS----RGGGGEDGQQGKP 53
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +3
Query: 264 DGRHCSEDGQDRGGVPHPQRADE*LHRRHQGGARRQDGDPRGKTRGLHQ---RAALPSQG 434
D R DG D+ G+ QRAD R+ RR D D G R+ P +
Sbjct: 199 DSRGRRSDGDDQKGICREQRADH-DDRKDSARERRADRDESNGESGRSSRRGRSVSPEEH 257
Query: 435 SS*GR*EDQ 461
GR E Q
Sbjct: 258 RHRGRHESQ 266
>02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250
Length = 207
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 462 PGLLNALKMILETGAQLVDVGLAFFLVGLHLGVERLL 352
PGL+ LKM GA VG GL++GVE+L+
Sbjct: 143 PGLIRTLKMCGSYGATFAAVG------GLYIGVEQLV 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,261,057
Number of Sequences: 37544
Number of extensions: 221584
Number of successful extensions: 947
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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