Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20239
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)               36   0.017
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_12374| Best HMM Match : SlyX (HMM E-Value=1.2)                      30   1.1  
SB_46938| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            29   3.3  
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         28   4.4  
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   4.4  
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)                  28   5.8  
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)                  27   7.6  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  27   7.6  
SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)                     27   7.6  
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)              27   7.6  

>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
          Length = 299

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 313 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ 477
           I  EQ        +E +  KME  +EKR++Y+  L++RL +    VE+ R T+E+
Sbjct: 189 IAQEQIEQQSKLIEEKIMQKMEMTKEKRDSYMEALKTRLHEKSLDVEQKRQTMEE 243


>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 346 ATKEALDAKMETHEEKREAYINELRSRLKDHLEG-VEKTRLTLEQQTAEVYKAIEV 510
           A ++AL+A     +E R+  + ELR ++ +  E  +E+ R+  E+Q AE+    E+
Sbjct: 52  AIRDALNAAEAKAQEDRKQALEELRKKMNEEREQCLEQARIRAEEQMAEIRYRCEI 107


>SB_12374| Best HMM Match : SlyX (HMM E-Value=1.2)
          Length = 157

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 50  KVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKA 229
           ++E +    KSTE+R QE       YE   +E   +          +T  +E ++EK + 
Sbjct: 46  ELEPLAEMLKSTELRLQEAQDRLFTYERRASEHTKLIAELTQKVESQTDQLEHMREKYRL 105

Query: 230 AEERRRSLE 256
            ++  RSL+
Sbjct: 106 TQDEYRSLQ 114


>SB_46938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 50  KVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKA 229
           ++E +    KSTE+R QE       YE   +E   +          +T  +E ++EK + 
Sbjct: 67  ELEPLAEMLKSTELRLQEAQDRLFTYERRASEHTKLIAELTQKVESQTDQLEHMREKYRL 126

Query: 230 AEERRRSLE 256
            ++  RSL+
Sbjct: 127 TQDEYRSLQ 135


>SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 65  EVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT--PSVEEIQEKLKAAEE 238
           E E   TE + ++   G + +   LA  +GV  P  ADS E+   P     +EK     E
Sbjct: 285 EEENSETEEQPRKPVGGPINFAAELASKIGVAPPPAADSDEEAAEPGAWSDEEKKPQQPE 344

Query: 239 RRRS 250
           ++RS
Sbjct: 345 KQRS 348


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 65  EVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT--PSVEEIQEKLKAAEE 238
           E E   TE + ++   G + +   LA  +GV  P  ADS E+   P     +EK     E
Sbjct: 149 EEENSETEEQPRKPVGGPINFAAELASKIGVAPPPAADSDEEAAEPGAWSDEEKKPQQPE 208

Query: 239 RRRS 250
           ++RS
Sbjct: 209 KQRS 212


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 352  KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 486
            K+  D+  E H+E ++  + E     K H+E ++ T + +EQQ A
Sbjct: 1422 KKVQDSSNEIHKENQD--LREELKMAKRHIESLKSTLIQVEQQAA 1464


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 346 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 507
           + KE    +M T +EK    + +  ++L+D L    K++    Q+ +E Y+A++
Sbjct: 423 SNKEKEYKRMATEQEKESKSLRKKNNQLEDELTNQGKSKEQEAQEHSEKYEALK 476


>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 304 PPRSWPSSEQWRPSY 260
           PP ++PSS+QW P+Y
Sbjct: 508 PPGAYPSSDQWIPAY 522


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 307  SRIRSEQTNNFIVATK-EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 483
            SR+ SE  +  I   K +  +A +E  ++K +  INE R +L++    ++ ++      +
Sbjct: 1455 SRLNSELEDALIDLEKAQTNNANLEKKQKKIDIQINEWRVKLEEVQADLDNSQKEARNYS 1514

Query: 484  AEVYK 498
             E+YK
Sbjct: 1515 TEMYK 1519


>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
          Length = 440

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 358 ALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 492
           AL  K     +  +  +N+   +L + +EG++ T +TL+QQ  ++
Sbjct: 235 ALQKKYSDELKSSQDELNDFVIQLDEEVEGMQSTIMTLQQQIKDI 279


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 188 KTPSVEEIQEKLKAAEERRR 247
           K P + E+QEKLKA +E RR
Sbjct: 281 KDPKLLELQEKLKAKKEERR 300


>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 325 QTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEK--TRLTLEQQTAEVYK 498
           QT   I+   E     ME  + + E    EL  +L+       K  T+L L Q+TAE YK
Sbjct: 401 QTQILILQVHEDYRKLMEQKQAEEERCRKELEEKLQTLERDSHKYRTKLELAQKTAETYK 460


>SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)
          Length = 356

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = +2

Query: 47  LKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLK 226
           + +E  +++ K+  I    ++K     ++++   +   +P  AD   K P  EEI EKLK
Sbjct: 162 ITMEQSQIQLKTINIPLDGINKSPA--QLMIGRRLKTSLPATADLL-KPPGQEEITEKLK 218

Query: 227 AAEERRR 247
             +E+++
Sbjct: 219 KIKEKQK 225


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 366 RQDGDPRGKTRGLHQRAALPSQGSS*GR*EDQVDPGTADRGSVQGHRSXMTTAADKRDRE 545
           +QD   + KTR    +AA P Q S   +   Q D    D    Q  R   T+    +D++
Sbjct: 621 KQDASRKTKTRKPQDQAARPRQASRKTKTSKQPDQDKQDARPRQASRKTKTSKPQDQDKQ 680


>SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 140 AEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERRRS 250
           ++P G P P++  SP+K   +   +  L+AA+  R S
Sbjct: 23  SKPTGKPTPQQFRSPQKVVQISVPRAGLQAAQNARYS 59


>SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)
          Length = 203

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 68  VETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEK 190
           +E +  +I C   +K GL   +   +  G P+PRRA  P K
Sbjct: 127 IERQGGKITCAHYNKLGLRVLLKPEKFEGKPIPRRAHPPSK 167


>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
          Length = 620

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +2

Query: 77  KSTEIRCQEMSKGGLAYEVI--LAEPVGV 157
           K+TE++CQ +++GG+A   +  + E +GV
Sbjct: 202 KNTELQCQSINRGGVAKASVMYIVEDIGV 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,372
Number of Sequences: 59808
Number of extensions: 232916
Number of successful extensions: 998
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)