Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20239
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    29   0.10 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   2.9  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   2.9  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   5.0  
AJ010194-1|CAA09033.1|  684|Anopheles gambiae prophenoloxidase p...    23   6.6  

>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 0.10
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 279 SEDGQDRGGVPHPQRADE*--LHRRHQGGARRQDGDPRGKTRGLHQR 413
           ++ G  + GV  PQ++ +    HR+HQ    +Q+G  + +  G+HQ+
Sbjct: 248 NQRGNKQNGVNLPQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIHQQ 294


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 307 SRIRSEQTNNFIVATKEAL-DAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 483
           S+ R  +  + +   +E L DAK++ HE+ R     E+    K  + GV    + + Q T
Sbjct: 476 SKERIHELQSELDNVREQLGDAKIDKHEDARRKKKQEVVELFKLEVPGVYDRMINMCQPT 535

Query: 484 AEVY 495
            + Y
Sbjct: 536 HKRY 539


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 390 KTRGLHQRAA-LPSQGSS*GR*EDQVDPGTADRGSVQ 497
           +TR + +R   LP +G+  G       PGT DR S+Q
Sbjct: 2   ETRSMRKRTTRLPEEGAPTG-----AGPGTGDRASIQ 33


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +2

Query: 191 TPSVEEIQEKLKAAEERR 244
           TP++EE++ + + AE+R+
Sbjct: 298 TPAIEELENECRIAEQRQ 315


>AJ010194-1|CAA09033.1|  684|Anopheles gambiae prophenoloxidase
           protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 156 TPTGSASITSYARPPFDISWQRISVDLVSTSMAST 52
           TP    S+  +ARP  +++   +S+   +T +A T
Sbjct: 650 TPNSVGSLQEFARPYRNMATTPVSIRFTNTVIART 684


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,157
Number of Sequences: 2352
Number of extensions: 7033
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)