Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20239
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    32   0.31 
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    32   0.31 
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    32   0.31 
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    32   0.31 
U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    28   5.1  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    28   5.1  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    28   5.1  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    28   5.1  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   5.1  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    27   6.7  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    27   6.7  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    27   6.7  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 322 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 483
           EQ N  +   +E LDAK + HE+ + A   +++S+  D    V K R  LE  T
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDDEAL-VTKYRNDLESLT 383


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 322 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 483
           EQ N  +   +E LDAK + HE+ + A   +++S+  D    V K R  LE  T
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDDEAL-VTKYRNDLESLT 383


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
           and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 322 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 483
           EQ N  +   +E LDAK + HE+ + A   +++S+  D    V K R  LE  T
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDDEAL-VTKYRNDLESLT 383


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 322 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 483
           EQ N  +   +E LDAK + HE+ + A   +++S+  D    V K R  LE  T
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDDEAL-VTKYRNDLESLT 383


>U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical
           protein C06E7.2 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 319 SEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 492
           SE     +++ +  +D   +  EEK E  +NE+   LK   E V+  +   E +T EV
Sbjct: 392 SEINEKILISNEIPVDEISKEEEEKAEKELNEIIKELKSDEEAVDGEKDVGELKTREV 449


>AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical
           protein M151.4 protein.
          Length = 591

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +1

Query: 370 KMETHEEK-REAYINELRS---RLKDHLEGVEKTRLTLEQQTAEV 492
           K++T ++K  E Y+N++R     LKD+ EG+EK    ++ +  E+
Sbjct: 204 KLQTDKDKLEEEYMNDMRDLKKALKDNQEGLEKIAKDVKNKEGEI 248


>AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical
           protein Y59A8A.3 protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 376 ETHEEKR--EAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEV 510
           E HE K+  E  +NEL  R K HL+ +E+ R   EQ + E  K  E+
Sbjct: 422 EFHEYKKQQEVIVNELNHREKAHLDTIEQLR---EQISIEKSKLAEL 465


>Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 322 EQTNNFIVATKEALDAKMETHEEKREAYINE---LRSRLKDHLEGVEKTRLTLEQQTAEV 492
           E T +      EALDA+ + H+  R A   E       L D  E  EK+++TL  +   +
Sbjct: 87  ETTEHLKDRVVEALDARRKEHDTVRNALKVEWTKATKSLHDCEESYEKSKITLRMREEAL 146

Query: 493 YKAIE 507
            KA E
Sbjct: 147 KKARE 151


>Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 322 EQTNNFIVATKEALDAKMETHEEKREAYINE---LRSRLKDHLEGVEKTRLTLEQQTAEV 492
           E T +      EALDA+ + H+  R A   E       L D  E  EK+++TL  +   +
Sbjct: 87  ETTEHLKDRVVEALDARRKEHDTVRNALKVEWTKATKSLHDCEESYEKSKITLRMREEAL 146

Query: 493 YKAIE 507
            KA E
Sbjct: 147 KKARE 151


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 370  KMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 507
            K + H+E+    +NE     +D +  +EK R  LEQQ  E+ + I+
Sbjct: 1007 KEKKHQEESNRKLNEDLQSEEDKVNHLEKIRNKLEQQMDELEENID 1052


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 370  KMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 507
            K + H+E+    +NE     +D +  +EK R  LEQQ  E+ + I+
Sbjct: 1007 KEKKHQEESNRKLNEDLQSEEDKVNHLEKIRNKLEQQMDELEENID 1052


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
            kinase protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 370  KMETHEEKREAYINE-LRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 507
            K+E+ +E  +  ++E L   L++ +   +KTR TLE+Q  +   A+E
Sbjct: 862  KLESWQEDEQRVLSEKLEKELEELIAYQKKTRATLEEQIKKERTALE 908


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
            protein 18, isoforma protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 370  KMETHEEKREAYINE-LRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 507
            K+E+ +E  +  ++E L   L++ +   +KTR TLE+Q  +   A+E
Sbjct: 862  KLESWQEDEQRVLSEKLEKELEELIAYQKKTRATLEEQIKKERTALE 908


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 152 GVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSL 253
           GVP+P+     EK    +E +EK+K+ EE  R L
Sbjct: 179 GVPIPKIDIEIEKASPKKEKKEKVKSPEELTRRL 212


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 352 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 492
           +E   AK++ +EE+R     +    LK   E  EK +L  EQ+  E+
Sbjct: 65  EEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 111


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 352  KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 492
            +E   AK++ +EE+R     +    LK   E  EK +L  EQ+  E+
Sbjct: 899  EEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 945


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 352 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 492
           +E   AK++ +EE+R     +    LK   E  EK +L  EQ+  E+
Sbjct: 65  EEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 111


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 352 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEVX*PQLPT 531
           +E +DA+     +KR+   N  R R+ + L+ ++K R    +   E   ++    P+  T
Sbjct: 398 EERIDAEKNVEVQKRKDERNAARKRINNFLKMMQKARENKNKPHKETTTSLATEQPKTTT 457

Query: 532 SVTEN 546
            V  +
Sbjct: 458 IVASS 462


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 140 AEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEE 238
           AE    P P   ++P   P+VEE      AAEE
Sbjct: 619 AEETPAPAPAVEETPAPAPAVEETPAPAPAAEE 651


>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
            protein Y43F4B.6 protein.
          Length = 1083

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +1

Query: 307  SRIRSEQTNNFIVA-TKEALDAKMET---HEEKREAYINELRSRLKDHLEGVEKTRLTLE 474
            + IR E    F +A TK    AK+ +   HEEKR+    E+R++ ++  + +E  +  L 
Sbjct: 830  AHIRKEIELEFKLARTKSEFTAKIASKASHEEKRKKEDEEMRAKYRELAQCLEDAKSGLH 889

Query: 475  QQTA 486
            ++ A
Sbjct: 890  EKIA 893


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,539,111
Number of Sequences: 27780
Number of extensions: 161327
Number of successful extensions: 858
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)