Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20237
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    26   2.3  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   5.4  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   7.1  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    24   9.4  

>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 248 ENDRSELVEVLIGEVHVRIRVYFSPDAN 165
           E+   E++E   GE  + +R++F+P+A+
Sbjct: 76  ESPPFEVIETGWGEFDIMVRIFFAPEAH 103


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 87  GGMSCVKYLMFCFNLLFAITGLIILIVGIR 176
           GG+    +L F + ++FA T  ++LI+ +R
Sbjct: 351 GGIGSSDFLNFLYGIIFAGTAGMMLILSLR 380


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 108 YLMFCFNLLFAITGLIILIVGI 173
           +++FCF   F ITG+   I+ I
Sbjct: 256 FIIFCFLSSFIITGVFFFIMSI 277


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 121 QNMRYFTQDIPPSRAIVIQLNITAKLYY 38
           Q+  Y  QD  P R  +I + I A LY+
Sbjct: 117 QHESYMRQDQQPDRRKIIDMRIHACLYF 144


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -2

Query: 175 LMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVIQLN 59
           ++P ++  NP + NR        F  + PP+    + L+
Sbjct: 119 VLPILQRFNPELFNRSSDNETPLFPNNSPPASTTALNLS 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,016
Number of Sequences: 5004
Number of extensions: 25589
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)