Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20237
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           27   3.8  
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947...    27   6.7  
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    26   8.9  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 170 ANYQDDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIK 60
           A +Q++     ++K+E    ++ TG  T   H YS+K
Sbjct: 755 AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVK 791


>06_03_1162 +
           28093749-28093851,28093939-28093997,28094691-28094766,
           28094848-28094919,28095023-28095110,28095230-28095485,
           28095583-28095698,28096064-28096127,28096252-28096354,
           28096446-28096554,28097048-28097234
          Length = 410

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 26  FYSVVIQFGGNI*LNNNGSRRWNVLCKVPHVLLQSSVCHYGIDH 157
           F+S+  Q+ G +     G   W+ L K P  ++  S     +DH
Sbjct: 6   FWSIYYQYEGAVNEGQRGPTIWDTLTKRPGRVIDFSNADVAVDH 49


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 65  LNNNGSRRWNVLCKVPHVLLQSSVCHYGIDHPD 163
           LN+      ++L  +PH   ++ +CH  +DH D
Sbjct: 862 LNSTCLHNLSLLSDLPHSTNRTHICHVRLDHID 894


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,194
Number of Sequences: 37544
Number of extensions: 160728
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)