Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20237
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                42   2e-04
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.046
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)                34   0.046
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.060
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)                33   0.11 
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.32 
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)                 30   0.56 
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            30   0.56 
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.74 
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)             28   2.3  
SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)                   28   3.0  
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)      28   3.0  
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 27   5.2  
SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         27   6.9  
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
 Frame = +3

Query: 75  MALEGGMSCVKYLMFCFNLLFAITGLIILIVGI-----RAEINSYPYMNFTDENFYKFAP 239
           M+ + G  C+K+++F FNLLF + G  I  +G+     + E+ +  Y   T    YK AP
Sbjct: 1   MSTDWGFKCIKFMVFFFNLLFLLAGCAIFAIGVWIISSKDEV-AGDYSRLTGTINYKTAP 59

Query: 240 IVLII 254
           I+ I+
Sbjct: 60  ILCIV 64



 Score = 31.9 bits (69), Expect = 0.18
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 290 CCGAVKENHCMIITVFSIPLDIF 358
           CCGA+KE+ CM+ T F +   IF
Sbjct: 77  CCGALKESQCMLGTYFGLVTAIF 99


>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 23/59 (38%), Positives = 31/59 (52%)
 Frame = +3

Query: 75  MALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLI 251
           MAL+G  + VK L+  FN +F + GLI+  VGI A      Y+     N Y   P V+I
Sbjct: 1   MALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVN-YATGPRVVI 58



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 290 CCGAVKENHCMIITVFSIPL 349
           CCGA KEN CM+I  F+  L
Sbjct: 72  CCGAWKENKCMLICFFAFLL 91


>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 33.9 bits (74), Expect = 0.046
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +3

Query: 96  SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLII 254
           +C+KY++F  N++F + G++IL++G           N  D   Y+ + ++LI+
Sbjct: 37  TCIKYILFFVNVVFWVFGVLILVIGSYLMTEFKNAWNL-DSILYEPSVVILIV 88


>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 299

 Score = 33.9 bits (74), Expect = 0.046
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +3

Query: 96  SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLII 254
           +C+KY++F  N++F + G++IL++G           N  D   Y+ + ++LI+
Sbjct: 37  TCIKYILFFVNVVFWVFGVLILVIGSYLMTEFKNAWNL-DSILYEPSVVILIV 88


>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  CVKYLMFCFNLLFAITGLIILIVGI 173
           CVKY +F  N++F + G +IL VGI
Sbjct: 59  CVKYSLFTINVIFWLAGAVILAVGI 83


>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 280

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  CVKYLMFCFNLLFAITGLIILIVGI 173
           C KY +F  N++F I GL+++ VG+
Sbjct: 27  CTKYTLFFINVIFFILGLLVMTVGV 51


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 290 CCGAVKENHCMIITVFSI 343
           CCGA+KE+ C++ T F++
Sbjct: 344 CCGAIKEHRCLLATFFAL 361


>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
          Length = 669

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 90  GMSCVKYLMFCFNLLFAITGLI 155
           GM C+KYL+F FN +F  + +I
Sbjct: 76  GMQCMKYLLFAFNFVFWCSKII 97



 Score = 29.5 bits (63), Expect = 0.98
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 290 CCGAVKENHCMIITV 334
           CCGAVKEN C ++ V
Sbjct: 217 CCGAVKENKCFLLLV 231


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 290 CCGAVKENHCMIITVFSIPL 349
           CCGA KEN CM+I  F + L
Sbjct: 425 CCGAWKENKCMLILFFILLL 444


>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 290 CCGAVKENHCMIITV 334
           CCGAVKE+ CM+ T+
Sbjct: 332 CCGAVKESRCMLATL 346


>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 137 CHYGIDHPDSWHQG*NKLVSLHELHR*ELLQVRSDRSHH 253
           C+Y +  PD+W +    + SL    R E++  R   S+H
Sbjct: 120 CYYSLQPPDNWDKKKTSIQSLCSRERKEVITSRYQTSNH 158


>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 733

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 187 FISALMPTIRMINPVMANRRLKQNMRYF 104
           FI+ALM  I +I  +M  + L++ M YF
Sbjct: 39  FITALMGNIILITVIMKTKSLRRTMNYF 66


>SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 839

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 179 SPDANYQDDQSRNGKQKIEAKHEVLYTG---HSTFESHC 72
           SP   ++    RNG+ K+E+     YTG   H+  +SHC
Sbjct: 22  SPLHAHKQSHCRNGEPKVESNKVQYYTGSPLHAHKQSHC 60



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 146 RNGKQKIEAKHEVLYTG---HSTFESHC 72
           RNG+ K+E+     YTG   H+  +SHC
Sbjct: 5   RNGEPKVESNKVQYYTGSPLHAHKQSHC 32


>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
          Length = 187

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 126 NLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVL 248
           +L+F + GL +L VGI A I    YM  +  ++   A I++
Sbjct: 39  HLVFQLMGLSVLAVGIWARIQFSDYMKLSSHDYATAAYILI 79



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 290 CCGAVKENHCMIITV 334
           CCGA+KE+ C++ TV
Sbjct: 93  CCGALKEHTCLLKTV 107


>SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 200 VRIRVYFSPDANYQ---DDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIKY 57
           + + +Y + ++ Y+   D+  R GK ++ +KH   Y  +    + CY + Y
Sbjct: 56  LHLHLYDNRESEYRKRIDELEREGKWRLHSKHVTDYNKYIPARAKCYLLTY 106


>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
          Length = 750

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 32  SVVIQFGGNI*LNNNGSRRWNVLCKVPHVLLQSSVCHYGIDHPD-SWHQG*NKLVSLHEL 208
           +V +   GN+ + + GSR W++   +PH L         IDH D +W       V+LH++
Sbjct: 127 AVALDMRGNVVVFHRGSRAWDLKFYMPHGLT--------IDHEDNTWITD----VALHQV 174

Query: 209 HR 214
           H+
Sbjct: 175 HK 176


>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
          Length = 211

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 87  GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEI 185
           G    +K L+  FN+LF I G+ ++ VG  AE+
Sbjct: 7   GAGRILKILVVFFNVLFFIFGIALIAVGAWAEV 39


>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 290 CCGAVKENHCMIITV 334
           CCGA+KE+ C++  V
Sbjct: 44  CCGAIKESRCLLAAV 58


>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 280 VLRLLWRCQREPLHDNNR 333
           +L +++ C R+PLHDN R
Sbjct: 407 ILIIVYLCARKPLHDNRR 424


>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 290 CCGAVKENHCMIITV 334
           CCGA+KE+ C++ T+
Sbjct: 235 CCGALKEHTCLLKTI 249


>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -1

Query: 164  YQDDQSRNGKQKIEAKHEVLYTGHSTFESH--CYSI 63
            Y  D  + G+ K    H VL   H   +SH  C+SI
Sbjct: 1144 YAIDDRQKGRTKYTGPHHVLTVDHGYTKSHPQCFSI 1179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,198,622
Number of Sequences: 59808
Number of extensions: 185337
Number of successful extensions: 565
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)