Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20237
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    37   0.006
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    36   0.010
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.069
U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 99  CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 206
           CVKY +F FN++F + G  +L+ G+ A+I    ++N
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 81  LEGGMSCVKYLMFCFNLLFAITGLIILIVG 170
           +EGG++ VKYL+F  NL+  + GL ++IVG
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 290 CCGAVKENHCMIIT 331
           CCGA++EN+C+ ++
Sbjct: 71  CCGAIRENYCLTVS 84


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.069
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 72  TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 206
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical
           protein T22B7.7 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 95  HSTFESHCYSIKYYRQIVLLRNKMIHTSANK 3
           H T  SH Y +  YR I+ LR K+  TS NK
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENK 172


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 92   STFESHCYSIKYYRQIVLLRNKMIHTSAN 6
            +TF S C S K   ++  + NKM+H +A+
Sbjct: 1941 ATFRSDCISQKISHRLYRIVNKMVHNNAD 1969


>Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical
           protein F30A10.5 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 190 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLY 41
           +F   L P +  + P++   +  QN+R    +IP   AI I   QL +   LY
Sbjct: 54  KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLY 106


>U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical
           protein T27B1.2 protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 137 KQKIEAKHEVLYTGHSTFESHCYSIKYYRQIVLLRNKMIHTSA 9
           K ++E +H+  +TG   FE    + ++ R+  L  +K IH+ A
Sbjct: 96  KMELE-EHQNSHTGQKPFECDTCNARFNRRSTLWNHKRIHSDA 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,351,946
Number of Sequences: 27780
Number of extensions: 145848
Number of successful extensions: 479
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)