Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20237
(383 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 38 4e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 2.8
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 22 2.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.8
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 4.9
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 20 8.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 8.6
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 37.9 bits (84), Expect = 4e-05
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 90 GMSCVKYLMFCFNLLFAITGLIILIVGI 173
GM +KYL+F FN +FA+ GL IL +G+
Sbjct: 4 GMGMIKYLLFIFNFVFAVCGLGILTLGV 31
Score = 33.1 bits (72), Expect = 0.001
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 290 CCGAVKENHCMIITVFSIPLDI 355
CCGA++E+HCM IT S L I
Sbjct: 70 CCGAIRESHCMTITFASFLLFI 91
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.8 bits (44), Expect = 2.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 47 IVLLRNKMIHTSAN 6
+V+ RNK +HT+ N
Sbjct: 76 VVIARNKSMHTATN 89
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 95 VLCKVPHVLLQ 127
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.0 bits (42), Expect = 4.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -2
Query: 169 PTIRMINPVMANRRLKQNMR 110
PT++ PV NR+L +++
Sbjct: 253 PTVQQHQPVTVNRQLNSDVQ 272
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 20.2 bits (40), Expect = 8.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 124 KQNMRYFTQDI 92
+Q + YFTQDI
Sbjct: 206 EQQLSYFTQDI 216
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.2 bits (40), Expect = 8.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 173 QG*NKLVSLHELH 211
Q +L SLHELH
Sbjct: 86 QSWQRLTSLHELH 98
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,336
Number of Sequences: 438
Number of extensions: 1800
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9424380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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