Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20237
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65850.1 68418.m08287 F-box family protein                          27   5.7  
At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phospha...    27   5.7  
At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phospha...    27   5.7  
At2g21870.2 68415.m02599 expressed protein                             27   5.7  
At2g21870.1 68415.m02598 expressed protein                             27   5.7  
At2g02880.1 68415.m00238 mucin-related similar to putative mucin...    26   7.5  
At5g24230.1 68418.m02851 expressed protein                             26   9.9  
At4g22430.1 68417.m03241 hypothetical protein                          26   9.9  
At3g27900.1 68416.m03481 hypothetical protein                          26   9.9  

>At5g65850.1 68418.m08287 F-box family protein
          Length = 392

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 77  GSRRWNVL-CKVPHVLLQSSVCHYGI 151
           G   W ++ C +PH+L  S +C  G+
Sbjct: 199 GELSWRIIECSMPHILGMSEICINGV 224


>At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phosphate
           dehydrogenase, putative similar to NADP-dependent
           glyceraldehyde-3-phosphate dehydrogenase
           (NON-phosphorylating glyceraldehyde 3-phosphate;
           glyceraldehyde-3-phosphate dehydrogenase [NADP+])
           [Nicotiana plumbaginifolia] SWISS-PROT:P93338
          Length = 496

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 84  EGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 206
           +G +SC+ +++ CF+L     GLI  I G  +EI  +  M+
Sbjct: 196 QGAVSCL-HMVHCFHLAGFPKGLISCITGKGSEIGDFLTMH 235


>At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phosphate
           dehydrogenase, putative similar to NADP-dependent
           glyceraldehyde-3-phosphate dehydrogenase
           (NON-phosphorylating glyceraldehyde 3-phosphate;
           glyceraldehyde-3-phosphate dehydrogenase [NADP+])
           [Nicotiana plumbaginifolia] SWISS-PROT:P93338
          Length = 496

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 84  EGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 206
           +G +SC+ +++ CF+L     GLI  I G  +EI  +  M+
Sbjct: 196 QGAVSCL-HMVHCFHLAGFPKGLISCITGKGSEIGDFLTMH 235


>At2g21870.2 68415.m02599 expressed protein
          Length = 220

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -2

Query: 175 LMPTIRMINPVMA-NRRLKQNMRYFTQDIPPSRAIVIQL 62
           +M TIR    + + ++R+K ++   TQDIP +RA +++L
Sbjct: 86  VMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKL 124


>At2g21870.1 68415.m02598 expressed protein
          Length = 240

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -2

Query: 175 LMPTIRMINPVMA-NRRLKQNMRYFTQDIPPSRAIVIQL 62
           +M TIR    + + ++R+K ++   TQDIP +RA +++L
Sbjct: 86  VMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKL 124


>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
           GI:18071389 [Oryza sativa]
          Length = 314

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -1

Query: 233 ELVEVLIGEVHVRIRVYFSPDANYQDDQ-SRNGK-QKIEAKHEVLYTGHSTFESHCYSIK 60
           E     I E+ V  + +      + D++  ++GK +K E K + +  G     S  YS++
Sbjct: 77  ESTATAIEEIDVEAKAFVEDMNEHWDERRGKSGKVEKREEKKKEIGDGEDESSSSLYSLE 136

Query: 59  YYRQIVLLRNKMIHTS 12
             ++   L+ + +H S
Sbjct: 137 TMKKDYRLKKQRVHAS 152


>At5g24230.1 68418.m02851 expressed protein
          Length = 369

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 277 RVLRLLWRCQREPLHDNNRFQYS 345
           R L+L  RC R+ LHD+ RF ++
Sbjct: 136 RDLKLDLRCIRDSLHDSTRFVHA 158


>At4g22430.1 68417.m03241 hypothetical protein
          Length = 348

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 125 EAKHEVLYTGHSTFESHCYSI 63
           E+KH   Y  H T E H Y I
Sbjct: 278 ESKHHDCYINHRTCEKHMYKI 298


>At3g27900.1 68416.m03481 hypothetical protein
          Length = 244

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 366 QASNMSRGILKTVIIMQWFSLTAPQQPKNATMK 268
           +A+  +R ++K+ I+  W SL    QPK   +K
Sbjct: 184 EANGFAREVIKSNILCLWKSLFETSQPKVINLK 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,779,377
Number of Sequences: 28952
Number of extensions: 133215
Number of successful extensions: 310
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)