Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20236
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   1.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    24   1.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.3  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   8.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.3  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 247 LQNTWLRGNQQPRPNAGVSLSIQ*DLGKTLVAHLQT 140
           ++N W  GNQQ     G    +   +G  L  HLQT
Sbjct: 400 IENWWSDGNQQIAFGRGNKGFVAFTIGYDLNQHLQT 435


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 247 LQNTWLRGNQQPRPNAGVSLSIQ*DLGKTLVAHLQT 140
           ++N W  GNQQ     G    +   +G  L  HLQT
Sbjct: 401 IENWWSDGNQQIAFGRGNKGFVAFTIGYDLNQHLQT 436


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +1

Query: 421 TDSPGPTPTIYRHTLTSCYS*TLKLNSTRNI*EHQQDL 534
           TD+P P  T+  H+  +  +  + L   ++  E   D+
Sbjct: 117 TDTPEPARTLLEHSFVAFNTNIISLVQNKDYVERDTDI 154


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 462 IDQLLQLNSEIEQHEEYLRASAGPSKLRL-PRCLE 563
           IDQ L LN   +++    R+  GP    L P  +E
Sbjct: 493 IDQSLALNRRRDENPRNYRSDEGPQITELEPETIE 527


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 462 IDQLLQLNSEIEQHEEYLRASAGPSKLRL-PRCLE 563
           IDQ L LN   +++    R+  GP    L P  +E
Sbjct: 493 IDQSLALNRRRDENPRNYRSDEGPQITELEPETIE 527


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 247 LQNTWLRGNQQPRPNAGVSLSIQ*DLGKTLVAHLQT 140
           ++N W  GNQQ     G    +   +G  L  H +T
Sbjct: 401 IENWWSDGNQQIAFGRGNKGFVAFTIGYDLNQHFET 436


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 469 WSMYACISSVLARGCLLRR 413
           WS++    ++   GC LRR
Sbjct: 214 WSLHPDSGNMFENGCYLRR 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,591
Number of Sequences: 336
Number of extensions: 3204
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)