Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20236
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.54 
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    27   1.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   3.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.0  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   5.0  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   6.6  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   6.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.6  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 351 HRRELANGVRTLDSWLTSAENLLNRQ-PRANTDDIQAYIDQLLQLNSEIEQHE-EYLRAS 524
           +R  L N   TL+    S ++L  RQ PR + + +Q   +++ ++N+E  QHE E L +S
Sbjct: 322 NRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQEKMQEVNAEKLQHENEKLESS 381


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 390 SWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEE 509
           SWL+S  N LN+   +   D   Y++    L +++E + E
Sbjct: 102 SWLSSKRNTLNKSKESLQKDEAEYVELANSLKTKVETNIE 141


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 421 TDSPGPTPTIYRHTLTSCY 477
           T+S   TP  ++HT  SCY
Sbjct: 388 TESSSKTPAPHKHTFNSCY 406


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +3

Query: 357  RELANGVRTLDSWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYLRASAGPS 536
            R+L+  +  L++ L   ++ + R       +I  +  +L    +++E H+  + +  G S
Sbjct: 1544 RDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRL----ADLEYHKSQVESELGRS 1599

Query: 537  KLRLPRCLE 563
            KL+L    E
Sbjct: 1600 KLKLASTTE 1608


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 49   LEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLTVWKEKHLRLGE 213
            L+ ++AH+  ++  S DF   L  A+HML   ++ +L++++ +  W    + L E
Sbjct: 2132 LQILMAHFYSFSE-SEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLFE 2185


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 367 PMESELWIRGSPARRIFLTDSPGPTP 444
           P E+++W   +  +RIFL D PG  P
Sbjct: 342 PGETKVWQYVALMKRIFLIDCPGIVP 367


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 128 CCALSNQTVKSLEMLFHLSQWAMTSSKTLLAHLTSEATRF 9
           C  +SN+T ++L  L   S W   +S TL    T E   F
Sbjct: 156 CSKISNETAENLLFLCLSSPWIFRASPTLQNTATFEEFPF 195


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 393 WLTSAENLLNRQ--PRANTDDIQAYIDQLLQLNSEIEQHEEY 512
           WL + E   + +  P+  +D I+ Y+D LL   S   QH E+
Sbjct: 87  WLKTCERQYDGESSPKGYSDLIRDYVDYLLDKLSFHAQHPEF 128


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 571 HLISRHLGNRSLEGPADALKYSSCCSISEFS 479
           H + +H G+ + EGP +   YSS    S+FS
Sbjct: 29  HHVPQHNGSLAHEGPTNQTDYSSRHHESQFS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,132
Number of Sequences: 5004
Number of extensions: 54134
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)