Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20236
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645... 30 1.7
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 29 3.0
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 28 5.2
11_02_0038 - 7631462-7634428,7635975-7636250 28 6.8
07_01_0257 - 1925145-1926140 28 6.8
01_01_1191 + 9487835-9488467,9492584-9492787 28 6.8
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 9.0
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920... 27 9.0
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 27 9.0
03_05_0133 - 21122150-21122314,21122715-21123036,21123088-21123227 27 9.0
>06_01_0847 -
6451525-6451678,6452870-6453066,6454300-6454591,
6454622-6454654,6454869-6455102,6455204-6455259,
6455552-6456754
Length = 722
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 247 LQNTWLRGNQQPRPNAGVSLSIQ*DLGKTLVAHLQTLSTCVALCPTKR*SHWKCYS 80
+QN LRGNQ+P N + K + + + L +C TK +CYS
Sbjct: 579 IQNGILRGNQRPPYNLAKPFGQKDQRSKVALPYAEPLVHFALVCGTKSGPALRCYS 634
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 429 PRANTDDIQAYIDQLLQLNSEIEQHEE 509
P A DD+Q ID+L++ ++E +HEE
Sbjct: 656 PPAVDDDLQELIDELMEDDAEDREHEE 682
>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 381 TLDSWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYLRASAGPS 536
T+D+ T A + Q N DD+ +D++ + ++Q ++ L A G S
Sbjct: 865 TVDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLGAS 916
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 562 SRHLGNRSLEGPADALKYSSCCSISEFSC--NSWS 464
S+ L N S P +KY SCC++S SC N W+
Sbjct: 164 SKLLANHSSLSPLP-IKYISCCNLSVTSCVRNVWT 197
>07_01_0257 - 1925145-1926140
Length = 331
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 573 PTSSRGISAIAVWKVLLMLLNIPRAVQFQSSAVTAGQCMPVYRRCWP 433
PTS G +A K+ L P V+ +++A+T G V RRCWP
Sbjct: 123 PTSMAGPAAK---KLALEGKAAPSLVKKKAAAITEGVRSYVTRRCWP 166
>01_01_1191 + 9487835-9488467,9492584-9492787
Length = 278
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 489 EIEQHEEYLRASAGPSKLRLPRCLEMRWETNMTQIE 596
E +Q EE + AGPS L CL +R T +E
Sbjct: 5 EQDQEEEVIIVGAGPSGLAAAACLSVRGVTGCLVLE 40
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 359 TPVSKCIATSYIAF-GFFPNSLPAFCDLYIFP 267
TP CI +I+ PNS P FC L + P
Sbjct: 54 TPPGSCIVLLHISLLSRVPNSAPKFCWLIVMP 85
>06_01_1196 +
10289708-10289823,10290828-10291541,10291614-10292058,
10292329-10293642
Length = 862
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 13 RVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLTVWKE 192
R+A +R R+ +EEV R+N I ND T + DER F +D+
Sbjct: 106 RIAIQIRNLRTRIEEVSTRNIRYNLIENDLTC----------TTTDERNLFMEDIRNQSA 155
Query: 193 KHLRLGEAAGF 225
++ + GF
Sbjct: 156 NNIEEADLVGF 166
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 351 HRRELANGVRTLDSWLTSAENLLNRQPRAN 440
+RR + NGV + +L S N NR+ +AN
Sbjct: 131 NRRSVGNGVMIMQRFLCSRGNYANRRNKAN 160
>03_05_0133 - 21122150-21122314,21122715-21123036,21123088-21123227
Length = 208
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 82 NSISNDFTVWLDKAQHMLRVSEDERLEFFQDLTVWKEKHLRLG 210
N + +DFTV K+ + E E + +D W+ H R+G
Sbjct: 10 NKLLDDFTVGKIKSDRSMSSDEIEIIAVVEDERYWQHWHRRVG 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,546,941
Number of Sequences: 37544
Number of extensions: 389877
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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