Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20236
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    33   0.14 
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)               29   3.0  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.0  
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_38884| Best HMM Match : SpoA (HMM E-Value=1.5)                      28   7.0  
SB_36658| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)                 28   7.0  
SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)            28   7.0  
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)                    27   9.2  
SB_3141| Best HMM Match : Vicilin_N (HMM E-Value=4.1)                  27   9.2  
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    27   9.2  

>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 1    ETWKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWL-DKAQHMLRVS 144
            + W+ V + V   +  LE  +  W+ + ++  + TVWL DK +H+ R S
Sbjct: 1143 QRWQLVNTRVTSNQQRLEVALKDWQEYTALMENVTVWLRDKEKHLKRPS 1191



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   ETWKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWL 114
           + W+ V  + R  R  LE+++  W  + +  +D   WL
Sbjct: 379 DRWRAVRQEARDERQRLEKLLRSWREYQADMDDLVDWL 416


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 432  RANTDDIQAYIDQLLQLNSEIEQHEEYLRASAGPSKLRLPRCLE 563
            +A  D+I+A +D+L +L  EI+  E  ++AS       +P C E
Sbjct: 4313 KAQPDEIKAQLDKLQELCKEIDAIEPVMQASLSAGNELIPHCDE 4356


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 52  EEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLT 180
           EEV   W+ W  + N+    L  A     + E+E+ ++++ +T
Sbjct: 445 EEVSKAWQDWGQVENEMWKSLSSAADKASLKEEEKAKYYESVT 487


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 396  LTSAENLLNRQPRANT--DDIQAYIDQLLQLNSEIEQHEEYLRASAGPSKLR 545
            L S   L N+  +A+T  DD+  Y  Q  +L SEI + +E  R+     +LR
Sbjct: 1987 LASENQLQNQLSKASTAVDDLAKYRQQYAELKSEIGKLQESFRSQVADVELR 2038


>SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
          Length = 331

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 411 NLLNRQPRANTDDIQAYIDQLLQLNSEIEQH 503
           ++ NRQPRAN DD + ++    + +S ++ H
Sbjct: 293 HMCNRQPRANPDDTENFLINSSRESSSVDVH 323


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 49   LEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLTVWKEKHL 201
            L EV  H+E + S    F  WLD+A+ ML+       E  Q   + K++ L
Sbjct: 3276 LNEVRIHFEDYRSKLKIFNSWLDEAEAMLKTEMFSVPEELQMEEIRKQEQL 3326


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 354 RRELANGVRTLDSWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQH 503
           R E+A    TLD  L+  E+  N   R  TD ++   DQL Q    I QH
Sbjct: 205 RDEVAKLETTLDEALSELEDKENENRRLTTD-LEDLTDQLEQERKRITQH 253


>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 123 RFVQPNGKVIGNAIPPLPVGDDFLQNAP 40
           R + P GKVI  A+ P+P+G     +AP
Sbjct: 807 RTINPTGKVISLAVAPMPMGLRSTAHAP 834


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +1

Query: 70  WERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLTVWKEKHLRLGEAAGFLAATCSED 249
           W+  NS ++  T   DK  H+ R+  D+ ++ F+      E +    + +G L A+CS+D
Sbjct: 237 WQNNNSFASCST---DKLIHVCRLGLDKPIKSFRGHM--SEVNAIRWDPSGTLLASCSDD 291

Query: 250 ISQRL 264
           +S +L
Sbjct: 292 MSAKL 296


>SB_38884| Best HMM Match : SpoA (HMM E-Value=1.5)
          Length = 399

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 357 RELANGVRTLDS--WLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEE 509
           + LANG++ L    WL S +   N +PR   D    +  +  +   ++E +++
Sbjct: 157 KNLANGIKNLHVRLWLPSRQRRANHEPRTARDPTSPWTSRSRKALGKVEPNQQ 209


>SB_36658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 247 LQNTWLRGNQQPRPNAGVSLSIQ*DLGKTLVAH 149
           L N W+R   QP+P   ++ +IQ D   TL  H
Sbjct: 360 LSNRWIRSASQPQPYISLTATIQPDDYTTLGFH 392


>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
          Length = 1814

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
 Frame = +3

Query: 354  RRELANGVRTLDSWLTSAENLLNRQPR-------ANT--DDIQAYIDQLLQLNSEIEQHE 506
            RR +   V+T+D++LTS    L+ +P+       AN    ++ +   Q+  L  + E   
Sbjct: 945  RRSITQEVQTIDTFLTSGMEALSTRPQTVEEIGEANLKHTELTSQKPQIQPLFEKAESKN 1004

Query: 507  EYLRASAGPSKLRLPRCLEMRWETNMTQIETAE 605
            + LR  AG    ++ + L+ RW+     +E+ E
Sbjct: 1005 KLLRNVAGGGVEQIGQ-LQARWDKFELMLESHE 1036


>SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)
          Length = 355

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = +1

Query: 145 EDERLEFFQDLTVWKEKHLRLGEAAGFLAATCSEDISQRLRGNM*RSQNAGSEFGKKPNA 324
           ++E     +  T WK+ + + G A  F A    +       G M       +EF +KPN+
Sbjct: 67  DEESPPIKKQTTTWKKLYFKAGYALSFKARVTGKS------GEM-----LCAEFVRKPNS 115

Query: 325 MYEVAMHFDTGVS*PMESELWIRGSPAR 408
                + FD      M  E WI+ +P +
Sbjct: 116 SMVNGVRFDNESPREMTVETWIKLNPRK 143


>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
          Length = 562

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = +1

Query: 139 VSEDERLEFFQDLTVWKEKHLRLGEAAGFLAATCSEDISQRLRGNM*RSQNAGSEFGK-K 315
           +SEDE L+  +D+   +E    LG+A        S+   + +R N+   Q+ GS +GK K
Sbjct: 415 LSEDEELDRSEDVKDSEEHEFSLGDAEKEFICATSKAYEELIR-NV-GDQSQGS-YGKLK 471

Query: 316 PN-AMYEVAM 342
           P+ AM+E +M
Sbjct: 472 PSIAMFESSM 481


>SB_3141| Best HMM Match : Vicilin_N (HMM E-Value=4.1)
          Length = 287

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 22  SDVRCARSVLEEVIAHWERWNSISNDFT 105
           S+    R V EE++A W R  +I +DFT
Sbjct: 244 SESTVLRQVKEEILAIWHRLVAIESDFT 271


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 1   ETWKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWL 114
           E W  V        S+L+EV+++W+ +         WL
Sbjct: 673 ERWSGVCRWTEMRWSILQEVLSNWQEYRDEEKRLAAWL 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,660,997
Number of Sequences: 59808
Number of extensions: 433083
Number of successful extensions: 1272
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)