Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20236
         (618 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-886|AAZ66447.1| 7744|Drosophila melanogaster CG33715-PB...    95   5e-20
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    95   5e-20
AE014297-4074|AAF56671.1|  866|Drosophila melanogaster CG5882-PA...    29   5.0  
U73809-1|AAC47328.2|  556|Drosophila melanogaster trithorax prot...    28   8.8  
BT011328-1|AAR96120.1|  350|Drosophila melanogaster SD28012p pro...    28   8.8  
AY051803-1|AAK93227.1|  556|Drosophila melanogaster LD31680p pro...    28   8.8  
AE014297-3588|AAN14010.1|  350|Drosophila melanogaster CG6677-PB...    28   8.8  
AE014297-3587|AAO41602.1|  556|Drosophila melanogaster CG6677-PC...    28   8.8  
AE014297-3586|AAF56320.2|  623|Drosophila melanogaster CG6677-PA...    28   8.8  

>AE014134-886|AAZ66447.1| 7744|Drosophila melanogaster CG33715-PB,
           isoform B protein.
          Length = 7744

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 40/89 (44%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   ETWKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLT 180
           E WKRV+ +++C ++ LEEV+  W  WN ++     WL  A+  +  SEDERL+FFQD+ 
Sbjct: 534 ERWKRVSMELKCCQNSLEEVVNCWRSWNQLAPTCEEWLQLAEQKVNQSEDERLDFFQDIP 593

Query: 181 VWKEKHLRLGEAAGFLAATCSEDISQRLR 267
           VWK+K   L  +A +L A+C E I+Q+LR
Sbjct: 594 VWKDKFDALASSANYLIASCEEPIAQQLR 622



 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +3

Query: 336 GDALRHRRELANGVRTLDSWLTSAENLLN-RQPRANTDDIQAYIDQLLQLNSEIEQHEEY 512
           GD +R R+E  +G+  L  WL  AE++L+ RQ   N++ ++ Y  QL QL SEI+ +EE 
Sbjct: 646 GDIIRSRQEYKSGIEQLSRWLRGAESVLDQRQVLGNSEQVKEYGQQLQQLASEIDDNEEL 705

Query: 513 LR 518
            +
Sbjct: 706 FK 707



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
 Frame = +1

Query: 4    TWKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLR-----------VSED 150
            T K    D+       ++V+A W+++     + T W   A+ + R           V + 
Sbjct: 3306 TMKSHFDDIEGIEGKQKDVLAQWDKFEKALEELTKWCRSAEAVFREQQLQSTLHEKVEQL 3365

Query: 151  ERLEFFQDLTVWKEKHL-RLGEAAGFLAATCSED 249
            E+ +  ++L + KEK +   G+AA  L   C  D
Sbjct: 3366 EKYKIQRELILQKEKEIDAFGDAAHALLNNCGAD 3399



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 509 IFKSISRTFQTAIAEMPRDEV 571
           +FK+ISR FQ+ I ++ RDEV
Sbjct: 705 LFKTISRNFQSLIQDLSRDEV 725



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 7    WKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLR--VSEDERLEFFQ 171
            W+ +++ +   R  L+++ A W+ ++   ND   W++     L+  V+E   +E F+
Sbjct: 1053 WQLLSNKLGDMRQTLQQIPAQWQGYHLKFNDMVDWMNGVDQSLKNIVNEVNTMEEFE 1109



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 7    WKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDL 177
            W+ + +  R ARS LE  +A W+ +    N   +W++     +  S++   +  +DL
Sbjct: 5452 WETLQTISRDARSSLESCLAAWQTFLQKFNKINLWIETMNKRVTKSQEGENKTPEDL 5508


>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
           isoform D protein.
          Length = 11707

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 40/89 (44%), Positives = 59/89 (66%)
 Frame = +1

Query: 1   ETWKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLT 180
           E WKRV+ +++C ++ LEEV+  W  WN ++     WL  A+  +  SEDERL+FFQD+ 
Sbjct: 534 ERWKRVSMELKCCQNSLEEVVNCWRSWNQLAPTCEEWLQLAEQKVNQSEDERLDFFQDIP 593

Query: 181 VWKEKHLRLGEAAGFLAATCSEDISQRLR 267
           VWK+K   L  +A +L A+C E I+Q+LR
Sbjct: 594 VWKDKFDALASSANYLIASCEEPIAQQLR 622



 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +3

Query: 336 GDALRHRRELANGVRTLDSWLTSAENLLN-RQPRANTDDIQAYIDQLLQLNSEIEQHEEY 512
           GD +R R+E  +G+  L  WL  AE++L+ RQ   N++ ++ Y  QL QL SEI+ +EE 
Sbjct: 646 GDIIRSRQEYKSGIEQLSRWLRGAESVLDQRQVLGNSEQVKEYGQQLQQLASEIDDNEEL 705

Query: 513 LR 518
            +
Sbjct: 706 FK 707



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
 Frame = +1

Query: 4    TWKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLR-----------VSED 150
            T K    D+       ++V+A W+++     + T W   A+ + R           V + 
Sbjct: 3306 TMKSHFDDIEGIEGKQKDVLAQWDKFEKALEELTKWCRSAEAVFREQQLQSTLHEKVEQL 3365

Query: 151  ERLEFFQDLTVWKEKHL-RLGEAAGFLAATCSED 249
            E+ +  ++L + KEK +   G+AA  L   C  D
Sbjct: 3366 EKYKIQRELILQKEKEIDAFGDAAHALLNNCGAD 3399



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 509 IFKSISRTFQTAIAEMPRDEV 571
           +FK+ISR FQ+ I ++ RDEV
Sbjct: 705 LFKTISRNFQSLIQDLSRDEV 725



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 7    WKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLR--VSEDERLEFFQ 171
            W+ +++ +   R  L+++ A W+ ++   ND   W++     L+  V+E   +E F+
Sbjct: 1053 WQLLSNKLGDMRQTLQQIPAQWQGYHLKFNDMVDWMNGVDQSLKNIVNEVNTMEEFE 1109



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 7    WKRVASDVRCARSVLEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDL 177
            W+ + +  R ARS LE  +A W+ +    N   +W++     +  S++   +  +DL
Sbjct: 5452 WETLQTISRDARSSLESCLAAWQTFLQKFNKINLWIETMNKRVTKSQEGENKTPEDL 5508


>AE014297-4074|AAF56671.1|  866|Drosophila melanogaster CG5882-PA
           protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 339 DALRHRRELANGVRTLDSWLTSAE---NLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEE 509
           +A    R L + + T+D+ L       N L ++     D+IQ +ID+L  L +E+   E 
Sbjct: 405 EAQHEVRALKDTITTMDTKLKKLNEDANKLKKEKTKKLDEIQHWIDKLDALQNEMHLKEN 464

Query: 510 Y 512
           Y
Sbjct: 465 Y 465


>U73809-1|AAC47328.2|  556|Drosophila melanogaster trithorax protein
           ASH2 protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 RSHCMERETPAFGRGCWF 224
           R +CM R T +  RGCW+
Sbjct: 333 RGYCMVRATHSVNRGCWY 350


>BT011328-1|AAR96120.1|  350|Drosophila melanogaster SD28012p
           protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 RSHCMERETPAFGRGCWF 224
           R +CM R T +  RGCW+
Sbjct: 127 RGYCMVRATHSVNRGCWY 144


>AY051803-1|AAK93227.1|  556|Drosophila melanogaster LD31680p
           protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 RSHCMERETPAFGRGCWF 224
           R +CM R T +  RGCW+
Sbjct: 333 RGYCMVRATHSVNRGCWY 350


>AE014297-3588|AAN14010.1|  350|Drosophila melanogaster CG6677-PB,
           isoform B protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 RSHCMERETPAFGRGCWF 224
           R +CM R T +  RGCW+
Sbjct: 127 RGYCMVRATHSVNRGCWY 144


>AE014297-3587|AAO41602.1|  556|Drosophila melanogaster CG6677-PC,
           isoform C protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 RSHCMERETPAFGRGCWF 224
           R +CM R T +  RGCW+
Sbjct: 333 RGYCMVRATHSVNRGCWY 350


>AE014297-3586|AAF56320.2|  623|Drosophila melanogaster CG6677-PA,
           isoform A protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 RSHCMERETPAFGRGCWF 224
           R +CM R T +  RGCW+
Sbjct: 400 RGYCMVRATHSVNRGCWY 417


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,054,501
Number of Sequences: 53049
Number of extensions: 636387
Number of successful extensions: 1779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)