Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20236
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024202-1|AAF36029.1|  285|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z93382-6|CAB07617.1|  136|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    27   8.1  
AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical...    27   8.1  
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    27   8.1  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   8.1  

>AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical
           protein Y51H1A.7 protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 339 DALRHRRELANGVRTLDSWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYLR 518
           D + H R++A+ V  L   +  AE  + R P    DD++  +   + +   + Q E   R
Sbjct: 88  DTINHLRDMASYVVELVCQI-DAEVKVRRNPALRIDDVKRDMIAGIAMQERVHQPERRPR 146

Query: 519 ASAGPSKLRLPR 554
            SA P+    P+
Sbjct: 147 RSAAPASPAKPQ 158


>Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical
           protein ZC247.2 protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 354 RRELANGVRTLDSWLTSAENL-LNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYLRASAG 530
           R + A  +  L+S++  A+   L ++     +D++  IDQL Q NS++ +    ++A+  
Sbjct: 610 RLKAAQRIIRLESFVVDAQVAKLEKESNKAKEDVRWEIDQLHQKNSQLRKDNREMKANQM 669

Query: 531 PSKLRLPRCLEMRWET 578
             + R+   LE +++T
Sbjct: 670 RLEARV-EALEQKFKT 684


>AC024202-1|AAF36029.1|  285|Caenorhabditis elegans Hypothetical
           protein Y71H2B.8 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 345 LRHRRELANGVRTLDSWLTSAENLLNRQPR 434
           LRHR E+++     D ++ +A NL+N  P+
Sbjct: 165 LRHRIEISSSESVTDKYIKTAFNLINNSPK 194


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 580 LVSHLISRHLG-NRSLEGPADALKYSSCCSISEFSCNS 470
           L SH  S HL  N  L G +   + +SC +++ FSCN+
Sbjct: 248 LGSHSDSAHLLLNNVLVGSSQLARATSCIALNTFSCNN 285


>Z93382-6|CAB07617.1|  136|Caenorhabditis elegans Hypothetical
           protein F45G2.8 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +3

Query: 336 GDALRHRRELANGVRTLDSWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYL 515
           G +    RE AN    L   L  +  +LN +   N ++++ + + L  +N + +    YL
Sbjct: 44  GQSASETRENANSNAKLGISLEESLQILNVKTPLNREEVEKHYEHLFNINDKSKGGTLYL 103

Query: 516 RASAGPSKLRL 548
           ++    +K R+
Sbjct: 104 QSKVFRAKERI 114


>Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical
           protein W04A4.5 protein.
          Length = 1071

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 514 KYSSCCSISEFSCNSWSMYACISSVLARGCLLRR 413
           K    C  S+    S  M+AC+  + ARG L RR
Sbjct: 85  KLIKACLTSKIETVSNKMFACLMGMFARGSLQRR 118


>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +1

Query: 103 TVWLDKAQHMLRVSEDERLEFFQDL-TVWKEKHLRL-----GEAAGFLAATCSEDISQRL 264
           TVW +  + +L  S D+    ++++  +W++  +RL     G+AAGF AA  S  +  + 
Sbjct: 293 TVWSNDGRVLLTASSDKTCIIWKEIDNLWRD-DVRLGIVGGGQAAGFFAAVFSSSLDLKD 351

Query: 265 RG 270
            G
Sbjct: 352 SG 353


>AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12b protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 502 CCSISEFSCNSWSMYACISSVLARGCLLRRFSALVSHESKVLTPLANSRL 353
           C S  +FS N    Y+ +S  L+    + R S L    S VLT L NSRL
Sbjct: 154 CSSFPQFS-NGEDPYSVVSPCLSDS--INRHSLLFFLVSNVLTGLVNSRL 200


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 502 CCSISEFSCNSWSMYACISSVLARGCLLRRFSALVSHESKVLTPLANSRL 353
           C S  +FS N    Y+ +S  L+    + R S L    S VLT L NSRL
Sbjct: 407 CSSFPQFS-NGEDPYSVVSPCLSDS--INRHSLLFFLVSNVLTGLVNSRL 453


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 381  TLD-SWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYL 515
            T+D S L + E  L+  P    +++QA ID+L Q     +Q E+ L
Sbjct: 2195 TIDLSMLNAIEEGLSTLPAHQAENVQAKIDELRQKKEVADQTEQIL 2240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,199
Number of Sequences: 27780
Number of extensions: 317611
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)