Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20236
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27520.1 68416.m03440 expressed protein 32 0.35
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 30 1.4
At5g36740.1 68418.m04402 PHD finger family protein 29 3.3
At5g36670.1 68418.m04388 PHD finger family protein 29 3.3
At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative / leuc... 28 4.3
At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai... 28 4.3
At4g12750.1 68417.m02002 expressed protein 28 5.7
At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam prof... 28 5.7
At3g26430.1 68416.m03294 GDSL-motif lipase/hydrolase family prot... 28 5.7
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 27 7.5
At1g07390.1 68414.m00788 leucine-rich repeat family protein cont... 27 7.5
At5g60900.1 68418.m07640 lectin protein kinase family protein co... 27 10.0
At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1) domain... 27 10.0
At2g39950.1 68415.m04909 expressed protein 27 10.0
>At3g27520.1 68416.m03440 expressed protein
Length = 198
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +1
Query: 43 SVLEEVIAHWERWNSISNDFTVWLDKAQHMLRVSEDERLEFFQDLTVW 186
S+L++++ ER ++ N+ + + +++ RV E+E + F DL +W
Sbjct: 138 SMLDQLLFTVERQEAVINEVSKLCEVTENICRVEEEETKQSFFDLPIW 185
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 387 DSWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYLR 518
D WL L R +NT Q D++L+LN+++ + +E+++
Sbjct: 392 DKWLRKEIEDLKRVLDSNTVQEQKLQDEILRLNTDLTERDEHIK 435
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -3
Query: 511 YSSCCSISEFSCNSWSMYACISSVLARGCLLRRFSALVSHESKVLTPLANSRLC 350
+ SC I +F +W Y C C HE+ L L++ RLC
Sbjct: 673 HQSCLDIKKFPSGAWYCYNC-------SCKFCEKDEAAKHETSTLPSLSSCRLC 719
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -3
Query: 511 YSSCCSISEFSCNSWSMYACISSVLARGCLLRRFSALVSHESKVLTPLANSRLC 350
+ SC I +F +W Y C C HE+ L L++ RLC
Sbjct: 673 HQSCLDIKKFPSGAWYCYNC-------SCKFCEKDEAAKHETSTLPSLSSCRLC 719
>At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative /
leucine--tRNA ligase, putative similar to SP|P36430
Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA
ligase) (LeuRS) {Bacillus subtilis}; contains Pfam
profile PF00133: tRNA synthetases class I (I, L, M and
V)
Length = 973
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 100 FTVWLDKAQHMLRVSEDERLEFFQDLTVWKEKHLRLGE 213
+T W D+ + + +ERL Q +T+ +EK ++ G+
Sbjct: 675 YTAWKDQEGNYVSADTEERLNEHQQVTIPEEKVIKSGD 712
>At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 213
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 381 TLDSWLTSAENLLNRQPRANTDDIQAYIDQLLQLNSEIEQHEEYLRASAG 530
T+D+ T A + Q N DD+ +D++ + ++Q +E L A G
Sbjct: 100 TVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149
>At4g12750.1 68417.m02002 expressed protein
Length = 1108
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 618 DQGLLLLFQFGSCWFPTSSRGISAIAVWKVLLMLLNIP 505
DQG L+ + +C FP+ + SAIA+W V L L P
Sbjct: 1046 DQGQTLMGEIINC-FPSMPQTTSAIALWLVKLDTLIAP 1082
>At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam profile
PF04784: Protein of unknown function, DUF547, weak hit
to PF00462: Glutaredoxin
Length = 587
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 247 LQNTWLRGNQQPRPNAGVSLSIQ*DLGKTLVAHLQTLSTCVALCPTKR*SHWKCYS 80
+QN LRGNQ+P N ++ K + + + L+ +C T+ +C++
Sbjct: 494 IQNGILRGNQRPMFNPMKPFGVKDKRSKVALPYAEPLTHFTLVCGTRSGPPLRCFT 549
>At3g26430.1 68416.m03294 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037; contains InterPro Entry IPR001087 Lipolytic
enzyme, G-D-S-L family
Length = 380
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 213 GCWFPRSHVF*RYQSEIKRKYVEI 284
GC PR+ + Y SE+KR+ +E+
Sbjct: 244 GCAIPRNEIARYYNSELKRRVIEL 267
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 375 LHWLTHACVEVHRHLVHSVRLLPKLAP 295
+HWL H+ +V H++ LL +LAP
Sbjct: 488 VHWLQHSLYDVTGSDAHTLWLLQRLAP 514
>At1g07390.1 68414.m00788 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 976
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 592 IWVMLVSHLISRHLGNRSLEGPADALKYSSCCSISEFSCNSWS 464
+W+ +S L ++ L+GP L+ S + + S NS+S
Sbjct: 593 LWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMDISHNSFS 635
>At5g60900.1 68418.m07640 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 748
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 226 GNQQPRPNAGVSLSIQ*DL--GKTLVAHLQTLSTCVALCP 113
G ++ +PN G +LSI D KT+V H Q ++T L P
Sbjct: 60 GFRKIQPNDGFTLSIWFDKISDKTIVWHAQAVNTTTGLVP 99
>At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein contains Pfam profiles PF00564:
PB1 domain, PF00515: TPR Domain
Length = 809
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 375 VRTLDSWLTSAENLLNRQPRANT-DDIQAYIDQLLQLNSEIEQHEEYLRASAG 530
V+TLD ++ ENL + P+ T DD ++ L SE+E ++ + + G
Sbjct: 76 VKTLDDCVSKVENLDDCVPKVETLDDCVPKVETLDDCVSEVETLDDCVSKAQG 128
>At2g39950.1 68415.m04909 expressed protein
Length = 636
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 150 IFRHSQHVLRFVQPNGKVIGNAIPPLPVGDDFL 52
IF Q L P G +I IPPLPV +D L
Sbjct: 524 IFSSGQSYLVSAGPTG-IISTGIPPLPVENDSL 555
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,400
Number of Sequences: 28952
Number of extensions: 299613
Number of successful extensions: 832
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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