Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20235
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545...    42   2e-04
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179...    40   9e-04
09_04_0757 - 19963832-19964866                                         29   2.2  
08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145     27   5.1  
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755...    27   9.0  

>03_06_0220 +
           32452831-32452944,32453618-32453911,32454416-32454503,
           32454596-32454717,32454985-32455142,32455201-32455273,
           32455552-32455640,32455753-32455858,32455967-32456179,
           32456726-32456920,32457051-32457128,32457209-32457523
          Length = 614

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
 Frame = +3

Query: 123 ISNLKTIKEGQAQICLTTE----KVFYNPVQEFNRDLSIAVLTLFI 248
           + + + ++EG+A+I +  +    +VFYNPVQ  NRD+S+A+L  FI
Sbjct: 8   LKDYEIVREGEAEIIINKKIAANEVFYNPVQVHNRDMSVALLRTFI 53



 Score = 36.7 bits (81), Expect = 0.008
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +2

Query: 353 ILEALSATGLXSIRYAKEIPYATNIIANDL 442
           +LEAL+A+GL SIRYA+EI     ++A D+
Sbjct: 134 VLEALAASGLRSIRYAREIDVLEKVVALDI 163


>10_06_0078 +
           10416950-10417174,10417595-10417679,10417782-10417900,
           10418200-10418287,10419400-10419452,10419876-10420015,
           10420094-10420166,10420243-10420311,10420632-10420844,
           10422304-10422498,10422581-10422658,10423456-10423590
          Length = 490

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 138 TIKEGQAQICLT-TEKVFYNPVQEFNRDLSIAVLTLFI 248
           TI+EG+A+I    +  VFYN  Q  NRDLSIAVL  FI
Sbjct: 53  TIREGRAEIFADDSNSVFYNKAQVNNRDLSIAVLRSFI 90



 Score = 31.9 bits (69), Expect = 0.24
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 353 ILEALSATGLXSIRYAKEIPYATNIIAND 439
           +LEAL+A+GL +IRYA E+     +IA D
Sbjct: 141 VLEALAASGLRAIRYALEVDGIGEVIAVD 169


>09_04_0757 - 19963832-19964866
          Length = 344

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 53  LVDPPGCRNSARAHFTDL-YENGNYIKLKNYKRRPSPDMFNYRE 181
           ++ P     S  A  TD+   NG+     NY R P  D+F +RE
Sbjct: 57  VIRPRAAHLSGTASSTDVPASNGSAAAAANYPRSPPHDLFRFRE 100


>08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145
          Length = 140

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 275 RFEKKQKKLETVQDEESRGNP 337
           R EK++KKLE  + E  +GNP
Sbjct: 57  RMEKRKKKLEKEKAEADKGNP 77


>03_02_0650 +
           10174905-10175000,10175321-10175376,10175467-10175540,
           10176215-10176753,10176845-10177186,10177520-10177879,
           10177982-10178193,10178881-10179169,10179469-10180152
          Length = 883

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 269 LARFEKKQKKLETVQDEESRGNPEPKITILEALSATGLXSI 391
           L  FEKK KKL + Q ++     +PK   +  L+A+    I
Sbjct: 421 LENFEKKNKKLASNQAKKPAHTDQPKENKIPLLTASNFEEI 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,461,528
Number of Sequences: 37544
Number of extensions: 122510
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)