Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20235
(445 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040126-1|AAH40126.1| 659|Homo sapiens TRM1 tRNA methyltransfe... 47 3e-05
BC018302-1|AAH18302.1| 630|Homo sapiens TRMT1 protein protein. 47 3e-05
BC002492-1|AAH02492.1| 659|Homo sapiens TRM1 tRNA methyltransfe... 47 3e-05
AK000251-1|BAA91031.1| 659|Homo sapiens protein ( Homo sapiens ... 47 3e-05
AF196479-1|AAG28495.1| 659|Homo sapiens N2,N2-dimethylguanosine... 47 3e-05
AC005546-2|AAC33150.1| 656|Homo sapiens R29425_1 protein. 47 3e-05
BC016029-1|AAH16029.1| 639|Homo sapiens CTTNBP2 N-terminal like... 29 5.5
AL354760-2|CAI22308.1| 639|Homo sapiens novel protein protein. 29 5.5
AL354760-1|CAI22307.1| 271|Homo sapiens novel protein protein. 29 5.5
AB037854-1|BAA92671.1| 652|Homo sapiens KIAA1433 protein protein. 29 5.5
>BC040126-1|AAH40126.1| 659|Homo sapiens TRM1 tRNA
methyltransferase 1 homolog (S. cerevisiae) protein.
Length = 659
Score = 46.8 bits (106), Expect = 3e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 TIKEGQAQICL-TTEKVFYNPVQEFNRDLSIAVLTLF 245
T+ EG A+I + +VFYNPVQEFNRDL+ AV+T F
Sbjct: 56 TVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEF 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 338 EPKITILEALSATGLXSIRYAKEIPYATNIIANDLS 445
E + +LE L+A+GL SIR+A E+P +++AND S
Sbjct: 151 EEGLHVLEGLAASGLRSIRFALEVPGLRSVVANDAS 186
>BC018302-1|AAH18302.1| 630|Homo sapiens TRMT1 protein protein.
Length = 630
Score = 46.8 bits (106), Expect = 3e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 TIKEGQAQICL-TTEKVFYNPVQEFNRDLSIAVLTLF 245
T+ EG A+I + +VFYNPVQEFNRDL+ AV+T F
Sbjct: 56 TVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEF 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 338 EPKITILEALSATGLXSIRYAKEIPYATNIIANDLS 445
E + +LE L+A+GL SIR+A E+P +++AND S
Sbjct: 151 EEGLHVLEGLAASGLRSIRFALEVPGLRSVVANDAS 186
>BC002492-1|AAH02492.1| 659|Homo sapiens TRM1 tRNA
methyltransferase 1 homolog (S. cerevisiae) protein.
Length = 659
Score = 46.8 bits (106), Expect = 3e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 TIKEGQAQICL-TTEKVFYNPVQEFNRDLSIAVLTLF 245
T+ EG A+I + +VFYNPVQEFNRDL+ AV+T F
Sbjct: 56 TVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEF 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 338 EPKITILEALSATGLXSIRYAKEIPYATNIIANDLS 445
E + +LE L+A+GL SIR+A E+P +++AND S
Sbjct: 151 EEGLHVLEGLAASGLRSIRFALEVPGLRSVVANDAS 186
>AK000251-1|BAA91031.1| 659|Homo sapiens protein ( Homo sapiens
cDNA FLJ20244 fis, clone COLF6450. ).
Length = 659
Score = 46.8 bits (106), Expect = 3e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 TIKEGQAQICL-TTEKVFYNPVQEFNRDLSIAVLTLF 245
T+ EG A+I + +VFYNPVQEFNRDL+ AV+T F
Sbjct: 56 TVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEF 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 338 EPKITILEALSATGLXSIRYAKEIPYATNIIANDLS 445
E + +LE L+A+GL SIR+A E+P +++AND S
Sbjct: 151 EEGLHVLEGLAASGLRSIRFALEVPGLRSVVANDAS 186
>AF196479-1|AAG28495.1| 659|Homo sapiens N2,N2-dimethylguanosine
tRNA methyltransferase protein.
Length = 659
Score = 46.8 bits (106), Expect = 3e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 TIKEGQAQICL-TTEKVFYNPVQEFNRDLSIAVLTLF 245
T+ EG A+I + +VFYNPVQEFNRDL+ AV+T F
Sbjct: 56 TVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEF 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 338 EPKITILEALSATGLXSIRYAKEIPYATNIIANDLS 445
E + +LE L+A+GL SIR+A E+P +++AND S
Sbjct: 151 EEGLHVLEGLAASGLRSIRFALEVPGLRSVVANDAS 186
>AC005546-2|AAC33150.1| 656|Homo sapiens R29425_1 protein.
Length = 656
Score = 46.8 bits (106), Expect = 3e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 TIKEGQAQICL-TTEKVFYNPVQEFNRDLSIAVLTLF 245
T+ EG A+I + +VFYNPVQEFNRDL+ AV+T F
Sbjct: 56 TVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEF 92
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 338 EPKITILEALSATGLXSIRYAKEIPYATNIIANDLS 445
E + +LE L+A+GL SIR+A E+P +++AND S
Sbjct: 151 EEGLHVLEGLAASGLRSIRFALEVPGLRSVVANDAS 186
>BC016029-1|AAH16029.1| 639|Homo sapiens CTTNBP2 N-terminal like
protein.
Length = 639
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 YKAEKLARFEKKQKKLET-VQDEESRGNPEPKITILEALSAT 376
++ ++ +FEK+QKKL + +++E SR + +LE AT
Sbjct: 149 FEKSQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKAT 190
>AL354760-2|CAI22308.1| 639|Homo sapiens novel protein protein.
Length = 639
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 YKAEKLARFEKKQKKLET-VQDEESRGNPEPKITILEALSAT 376
++ ++ +FEK+QKKL + +++E SR + +LE AT
Sbjct: 149 FEKSQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKAT 190
>AL354760-1|CAI22307.1| 271|Homo sapiens novel protein protein.
Length = 271
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 YKAEKLARFEKKQKKLET-VQDEESRGNPEPKITILEALSAT 376
++ ++ +FEK+QKKL + +++E SR + +LE AT
Sbjct: 149 FEKSQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKAT 190
>AB037854-1|BAA92671.1| 652|Homo sapiens KIAA1433 protein protein.
Length = 652
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 YKAEKLARFEKKQKKLET-VQDEESRGNPEPKITILEALSAT 376
++ ++ +FEK+QKKL + +++E SR + +LE AT
Sbjct: 162 FEKSQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKAT 203
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,905,794
Number of Sequences: 237096
Number of extensions: 696972
Number of successful extensions: 1677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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