Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20235
         (445 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051836-1|AAK93260.1|  578|Drosophila melanogaster LD33880p pro...    46   2e-05
AE014134-2200|AAF53189.1|  578|Drosophila melanogaster CG6388-PA...    46   2e-05
X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like p...    38   0.008

>AY051836-1|AAK93260.1|  578|Drosophila melanogaster LD33880p
           protein.
          Length = 578

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 12/67 (17%)
 Frame = +2

Query: 281 EKKQKKLETVQDEESRGNPEPK------------ITILEALSATGLXSIRYAKEIPYATN 424
           +K++KK++  +DE++   PE              + ILEAL+ATGL SIRYA+EI     
Sbjct: 67  KKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDGLRILEALAATGLRSIRYAQEIAGVRQ 126

Query: 425 IIANDLS 445
           I+ANDLS
Sbjct: 127 IVANDLS 133



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = +3

Query: 129 NLKTIKEGQAQICLTTEKVFYNPVQEFNRDLSIAVLTLF 245
           N   I+E  A+I ++   VFYNPVQEFNRDLSIA L ++
Sbjct: 16  NENVIRERNAEI-VSGGNVFYNPVQEFNRDLSIAALNVY 53


>AE014134-2200|AAF53189.1|  578|Drosophila melanogaster CG6388-PA
           protein.
          Length = 578

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 12/67 (17%)
 Frame = +2

Query: 281 EKKQKKLETVQDEESRGNPEPK------------ITILEALSATGLXSIRYAKEIPYATN 424
           +K++KK++  +DE++   PE              + ILEAL+ATGL SIRYA+EI     
Sbjct: 67  KKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDGLRILEALAATGLRSIRYAQEIAGVRQ 126

Query: 425 IIANDLS 445
           I+ANDLS
Sbjct: 127 IVANDLS 133



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = +3

Query: 129 NLKTIKEGQAQICLTTEKVFYNPVQEFNRDLSIAVLTLF 245
           N   I+E  A+I ++   VFYNPVQEFNRDLSIA L ++
Sbjct: 16  NENVIRERNAEI-VSGGNVFYNPVQEFNRDLSIAALNVY 53


>X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like
           protein protein.
          Length = 110

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 29  TAXXXXLELVDPPGCRNSA----RAHF-TDLYENGNY--IKLKNYKRRPSPDMF 169
           TA    LELVDPPGCRNSA    RA+  + LY    Y  + L  Y   P P  F
Sbjct: 4   TAVAAALELVDPPGCRNSARDRQRANLNSQLYAGYPYPGVYLPQYPAYPQPAQF 57


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,117,377
Number of Sequences: 53049
Number of extensions: 210138
Number of successful extensions: 710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1438687674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)