Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20235
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical pr...    46   9e-06
AF059608-1|AAD13737.1|  526|Caenorhabditis elegans N2,N2-dimethy...    46   9e-06
U55371-1|AAL02525.1|  432|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AY919615-1|AAY16564.1|  432|Caenorhabditis elegans FLP-2 recepto...    28   2.7  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC376.5 protein.
          Length = 526

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
 Frame = +2

Query: 275 RFEKKQKKLETVQDEESRGNP-----EPKITILEALSATGLXSIRYAKEIPYATNIIAND 439
           ++ ++QK+L+T ++   + N      + KI IL+ALSA+GL ++R++KE+P    I+AND
Sbjct: 63  KWAEEQKQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMAND 122

Query: 440 LS 445
            S
Sbjct: 123 FS 124



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = +3

Query: 108 MRMETISNLKTIKEGQAQICLTTEKVFYNPVQEFNRDLSIAVLTLFIED 254
           ++ E    +  I+EGQA++      VFYNPVQEFNRDL++ VL  F  D
Sbjct: 13  IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSAD 60


>AF059608-1|AAD13737.1|  526|Caenorhabditis elegans
           N2,N2-dimethylguanosine tRNA methyltransferase protein.
          Length = 526

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
 Frame = +2

Query: 275 RFEKKQKKLETVQDEESRGNP-----EPKITILEALSATGLXSIRYAKEIPYATNIIAND 439
           ++ ++QK+L+T ++   + N      + KI IL+ALSA+GL ++R++KE+P    I+AND
Sbjct: 63  KWAEEQKQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMAND 122

Query: 440 LS 445
            S
Sbjct: 123 FS 124



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = +3

Query: 108 MRMETISNLKTIKEGQAQICLTTEKVFYNPVQEFNRDLSIAVLTLFIED 254
           ++ E    +  I+EGQA++      VFYNPVQEFNRDL++ VL  F  D
Sbjct: 13  IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSAD 60


>U55371-1|AAL02525.1|  432|Caenorhabditis elegans Hypothetical
           protein T19F4.1b protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 239 AVY*RYKAEKLARFEKKQKKLETVQDEESRGNPEPKITILEAL 367
           A +  +K  KL   EK++KKL  +   E RG PE  IT  E L
Sbjct: 379 APFEEHKLPKLPS-EKRKKKLHKMSAVEHRGMPEITITFSEDL 420


>AY919615-1|AAY16564.1|  432|Caenorhabditis elegans FLP-2 receptor
           protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 239 AVY*RYKAEKLARFEKKQKKLETVQDEESRGNPEPKITILEAL 367
           A +  +K  KL   EK++KKL  +   E RG PE  IT  E L
Sbjct: 379 APFEEHKLPKLPS-EKRKKKLHKMSAVEHRGMPEITITFSEDL 420


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 257 KAEKLARFEKKQKKL 301
           KA KLA+FE+KQKKL
Sbjct: 21  KAAKLAKFEEKQKKL 35


>AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical
           protein C35E7.9 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 257 KAEKLARFEKKQKKLETVQDEESRGNPEPKITI 355
           K E+    +K++KK +  +++E +  P+P ITI
Sbjct: 163 KKEEKKEEKKEEKKEDEKKEDEKKEEPKPHITI 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,391,156
Number of Sequences: 27780
Number of extensions: 114912
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)