Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20235
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.49 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   3.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 93  WARAEFLQPGGSTSSR 46
           +A+ EFL PGGS   R
Sbjct: 65  YAKCEFLNPGGSVKDR 80


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 LYENGNYIKLKNYKRRPSPDMFN 172
           LY N N++ L +Y +  + D+ N
Sbjct: 183 LYNNKNFVDLSDYWKSGTWDIIN 205


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 373 NRPXKHPLC*RNTICY 420
           N P + P C RN  CY
Sbjct: 3   NEPQECPYCRRNFSCY 18


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 95  FTDL-----YENGNYIKLKNYKRRPSPDMFNYREGFLQSCSRIQP 214
           FTDL     YE+   +K    +  PSP +   R+G  ++  R+ P
Sbjct: 595 FTDLSNERKYEDVCVLKTDTNQSCPSPPVTTKRDGTQETEERLPP 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,548
Number of Sequences: 438
Number of extensions: 1701
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)