Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20234
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.71 
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    28   0.94 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   2.9  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    27   2.9  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    26   3.8  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   3.8  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   5.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.0  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.8  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   8.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.8  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   8.8  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 350 VHKLNRVFGEDKSELNWETIPDDVL 276
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 18/74 (24%), Positives = 29/74 (39%)
 Frame = +3

Query: 360 GLALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNTWYWES 539
           G+  TL    + DDG     +  D  +    W+   + +       I  T+ + T    S
Sbjct: 290 GIPQTLLLGEEADDGSDPDQETSDTAASDDGWEFGTIKQGQSNVSSITGTSTSTTTAATS 349

Query: 540 ALTGTATIWPSEST 581
           + T T T+ P  ST
Sbjct: 350 STTVTGTVIPKSST 363


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 106 QLYNSVVVADYDSAVEKSKHLYEEKKS 186
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 265 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 366
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 295 VSQLSSDLSSPKTRLSLCTSATV 363
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 613 GTTGALKLSTLVDSEGHMVAVPVSAD 536
           GT+G     T +D  GH + +PVS D
Sbjct: 78  GTSGVDVRKTTIDFTGHSMRIPVSED 103


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 425 QGQDKPESQLEVNRSVGEQQGLLQDLEHERNQYLVLGVGTNW 550
           +G  KP +   +++++  + G L+D + E N  L    G+ W
Sbjct: 108 EGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGW 149


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 471 WENNKVYFKILNTNVTNTWYWESALTGTATIWPSESTSVDS 593
           W+N     K  N +   TW W+S   G   +  S+ TSV S
Sbjct: 411 WDNVLTAHK--NDSSARTWNWKSKTLGQHVLPTSDGTSVRS 449


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 488 LLQDLEHERNQYLVLGVGTNWNGDHM 565
           LLQ+L HE   ++V  +G+N N DH+
Sbjct: 450 LLQELSHE---HIVQYLGSNLNSDHL 472


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 468 LWENNKVYFKILNTNVTNTWYWESALTGTAT 560
           LW N+ VY+ + +++ T T     ++T T+T
Sbjct: 737 LWANDAVYYPVSSSSTTTTSTSTGSVTTTST 767


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 24/97 (24%), Positives = 41/97 (42%)
 Frame = +1

Query: 73   DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYA 252
            DS     + +E     + V + D A+E      EE+K   +T VV+ +I N  +    Y 
Sbjct: 1051 DSCTAYGVWDESWAQKISVVNGDLALENWG--IEERKWNKLTEVVDYVIHNGALVHWVYP 1108

Query: 253  YNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATV 363
            Y+   R P     I +     L   K+   + +++TV
Sbjct: 1109 YS-KLRGPNVMGTITALKLCSLGKGKSLSFVSSTSTV 1144


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 172  EEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQLSSD--LSSPKTRLSL 345
            E ++  VI +  + L+++  MNC +YA ++  R   +   I+S +S +   S+ + R   
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRS 1170

Query: 346  CTSATVSL 369
            C    + L
Sbjct: 1171 CAKPALGL 1178


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 488 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 354
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 365  ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 255
            E V  +H L+  F ED+ E   E I  DV  A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 222  KQQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFAENA 335
            +++D+L  V L  +L+    +  DCF  + +++  ENA
Sbjct: 926  REEDQLSRVTLLEYLKQLHPVEWDCFVKDTKILVEENA 963


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 351 KRDGLALTLSNDVQGDDGRPAYGD 422
           K++G+  +  ND  G++G  AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,285
Number of Sequences: 5004
Number of extensions: 40619
Number of successful extensions: 201
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)