Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20234
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 29   2.3  
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   5.3  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_23875| Best HMM Match : Porin_3 (HMM E-Value=3.22299e-44)           28   7.0  
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               27   9.2  

>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/98 (21%), Positives = 46/98 (46%)
 Frame = +1

Query: 76  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 255
           S++  +++  +  NS + + +     + +  +E +K E+   ++++          E++ 
Sbjct: 36  SELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHEKEELRYSLEAEFSQ 95

Query: 256 NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 369
            F + +  T SG++ QL  DL   KTR     SA + L
Sbjct: 96  KFVNESA-TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +1

Query: 157 SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPKTR 336
           S+ L +EKK E ++ +    + N K + + +  NF +  P   S    +L ++ +S  + 
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283

Query: 337 LSLCTSATVSL 369
             L T   VSL
Sbjct: 284 GRLITRCQVSL 294


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 431 QDKPESQLEVNRSVGEQQGLLQDLEHERNQY 523
           + KP S    NR+ G ++G +QD   +R  Y
Sbjct: 354 ESKPSSSSSKNRNTGLERGRVQDFGRDRRDY 384


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 71  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 202
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +1

Query: 112  YNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKL--IRNNKMNCMEYAYNFGSRAPRTS 285
            ++SV    +DS+V   + L+E KK     +++  L  +   + N    +    SR P  S
Sbjct: 910  FHSVGGTSWDSSVADEEDLFEVKKKPDKPSLLAALKPVARQESNASLKSNKSASRIPVRS 969

Query: 286  SGIVSQLSSDLSS---PKTRLSLCTS 354
              + S +S D  S   P +R+ + +S
Sbjct: 970  DSVKSSVSVDFKSKEPPASRIPVLSS 995


>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +1

Query: 76  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 255
           SDVP  +     Y +  + D DSA + S       KS +  N V +        C   + 
Sbjct: 42  SDVPEPVAASTPYQTRELRDMDSANDGSSLKKHTDKSNMAHNAVERFSTETTSVCRSVSE 101

Query: 256 NFGSRAPRTSSGIVSQLSSD 315
              S+ P +S  +  +  SD
Sbjct: 102 ESQSQEPISSVLVHDESFSD 121


>SB_23875| Best HMM Match : Porin_3 (HMM E-Value=3.22299e-44)
          Length = 270

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 610 TTGALKLSTL-VDSEGHMVAVPVSADSQYQ 524
           TT + KL+ L VDS G    V V ADS+YQ
Sbjct: 67  TTASAKLACLQVDSRGSPTWVLVQADSEYQ 96


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
 Frame = +3

Query: 153 KEQAFIRGEEERSHHKCREQTDTK-------QQDELHGVRLQLW---LQGSKDIVRDCF 299
           K Q   R EEE    K +E+  T+       + D+LHG+R+  W   L G +++    F
Sbjct: 28  KLQEKARAEEEAKEKKRKEEDATRIAELEKPKPDKLHGLRVHCWVLVLSGKREVPESFF 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,801
Number of Sequences: 59808
Number of extensions: 309542
Number of successful extensions: 1616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)