Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20234
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY363099-1|AAQ24172.1|  837|Homo sapiens normal early placenta p...    34   0.46 
AB033114-1|BAA86602.1| 1245|Homo sapiens KIAA1288 protein protein.     34   0.46 
AC074331-4|AAF88107.1|  751|Homo sapiens Hypothetical zinc finge...    31   2.5  
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            29   9.9  

>AY363099-1|AAQ24172.1|  837|Homo sapiens normal early placenta
           protein.
          Length = 837

 Score = 33.9 bits (74), Expect = 0.46
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +1

Query: 166 LYEEKKSEVITNVV-----NKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPK 330
           L  +KK+E++ N       NKLI +  ++   ++ N   R PRT+S + S    D+    
Sbjct: 561 LNADKKAEILINKTRKQQFNKLITSQAVHVTTHSKNASHRVPRTTSAVKSN-QEDVDKAS 619

Query: 331 TRLSLCTSATVS 366
           +  S C + +VS
Sbjct: 620 SSNSACETGSVS 631


>AB033114-1|BAA86602.1| 1245|Homo sapiens KIAA1288 protein protein.
          Length = 1245

 Score = 33.9 bits (74), Expect = 0.46
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +1

Query: 166 LYEEKKSEVITNVV-----NKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPK 330
           L  +KK+E++ N       NKLI +  ++   ++ N   R PRT+S + S    D+    
Sbjct: 536 LNADKKAEILINKTHKQQFNKLITSQAVHVTTHSKNASHRVPRTTSAVKSN-QEDVDKAS 594

Query: 331 TRLSLCTSATVS 366
           +  S C + +VS
Sbjct: 595 SSNSACETGSVS 606


>AC074331-4|AAF88107.1|  751|Homo sapiens Hypothetical zinc
           finger-like protein protein.
          Length = 751

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 91  DILEEQLYNSVVVADYDSAVEK-SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYNFGS 267
           D+ + +LY  V+V ++ + V   SKH   + K E +     K + N +++C +      S
Sbjct: 21  DLTQRKLYRDVMVENFKNLVAVGSKH---QNKMETLQKFALKYLSNQELSCWQIWKQVAS 77

Query: 268 RAPRTSSGIVSQL 306
              R   G  SQL
Sbjct: 78  ELTRCLQGKSSQL 90


>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +1

Query: 265 SRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQA 441
           +RAP  S+  V  LS  L+SP+   +L T+ T    + A   + T+  + T+T  TR A
Sbjct: 316 TRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPRQSAGSTEPTVPGVATSTLPTRSA 374


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,216,753
Number of Sequences: 237096
Number of extensions: 1422246
Number of successful extensions: 3915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3915
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)