Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20234
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 1.2
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 1.2
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 29 2.0
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 4.6
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 28 4.6
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 28 4.6
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 4.6
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 28 6.1
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 133 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 243
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 133 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 243
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 171 RGEEERSHHKCREQTDTK---QQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFA 326
R EE+ K R QT T+ Q+ E+ L++ L+ S+D+ RDC ++ FA
Sbjct: 41 RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 259 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 366
FG APRT SG + Q S++L S+PKT A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +1
Query: 13 PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 180
P +K +V LC+ +LY + S + + EQLY +SV A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 181 KSEVITNVVNKLIRNNKMNCMEYAYN 258
+ E N++N + C+E AY+
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAYD 1005
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 420 DGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNT 524
D KD+ +P VS KL+AL + NK FK NT
Sbjct: 120 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 153
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 420 DGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNT 524
D KD+ +P VS KL+AL + NK FK NT
Sbjct: 611 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 644
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +1
Query: 13 PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 180
P +K +V LC+ +LY + S + + EQLY +SV A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 181 KSEVITNVVNKLIRNNKMNCMEYAYN 258
+ E N++N + C+E AY+
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAYD 1005
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 271 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 366
A + SSG+VSQ+SS SS + R +L ++ S
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,227
Number of Sequences: 27780
Number of extensions: 227427
Number of successful extensions: 828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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