Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20234
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.11
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 31 0.81
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 29 2.5
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t... 27 7.5
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 7.5
At1g59077.1 68414.m06670 hypothetical protein 27 7.5
At1g58766.1 68414.m06659 hypothetical protein 27 7.5
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 7.5
At5g10060.1 68418.m01165 expressed protein 27 10.0
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 10.0
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 4 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 183
+D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 184 SEVITNV 204
+ N+
Sbjct: 214 GSIAPNL 220
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 30.7 bits (66), Expect = 0.81
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 274 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 366
PR +G S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 506 HERNQYLVLGVGTNWNGDHMAF 571
H N L L VGTN NG H AF
Sbjct: 271 HHYNSSLELAVGTNNNGGHFAF 292
>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 231
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 462 IALWENNKVYFKILNTNVTNTWYWESAL 545
I W N ++++K + TNT WES +
Sbjct: 107 IRTWPNQRLHYKFIRCVETNTNAWESCV 134
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 204
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 204
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 204
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 7.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +2
Query: 50 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 145
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At5g10060.1 68418.m01165 expressed protein
Length = 469
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 151 EKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQ 303
EK H E + + + N +++N+K E+ F + P+ IVSQ
Sbjct: 46 EKQFHSTEMDQKVPLLYLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQ 96
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 114 VKLLLQNVVRDVGICSIQRCH 52
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,198
Number of Sequences: 28952
Number of extensions: 217692
Number of successful extensions: 879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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