Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20233
         (494 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   1.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   2.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   6.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.1  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 386 PTLSGNKEPAPVKETAPDPKD 448
           P       PAP    AP+P D
Sbjct: 252 PATKSKPRPAPASRNAPEPAD 272


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 402 IKSRLRSKRPHRTPKTP 452
           ++  LR  +P+R P+TP
Sbjct: 105 VRCALRKHKPNRKPRTP 121


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 350 QTPPSPALNGDSPTLSGNKEPAPVKE 427
           + PP+PA++     + G+  P   K+
Sbjct: 455 EAPPAPAVSNPQNEVDGSVAPKECKQ 480


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 FYVNNLQTLFSAEQVFHFESSK 194
           F+V  L +LF + ++  F+SSK
Sbjct: 139 FWVPQLGSLFRSSRMCFFKSSK 160


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 FYVNNLQTLFSAEQVFHFESSK 194
           F+V  L +LF + ++  F+SSK
Sbjct: 139 FWVPQLGSLFRSSRMCFFKSSK 160


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 FYVNNLQTLFSAEQVFHFESSK 194
           F+V  L +LF + ++  F+SSK
Sbjct: 139 FWVPQLGSLFRSSRMCFFKSSK 160


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 FYVNNLQTLFSAEQVFHFESSK 194
           F+V  L +LF + ++  F+SSK
Sbjct: 139 FWVPQLGSLFRSSRMCFFKSSK 160


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = +2

Query: 356 PPSPALNGDSPTLSGNKEP 412
           PP P +N       G  EP
Sbjct: 17  PPQPYMNAQDAPAGGENEP 35


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 420 SKRPHRTPKTPERPSK 467
           ++ PHR    PE PSK
Sbjct: 95  AQSPHRIYMHPESPSK 110


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 54  AKRTYEILNSELHDELPALYDSRVLFYVNNL 146
           +K TY    ++L D   +L    V  ++NNL
Sbjct: 347 SKNTYNEQGNKLADLYKSLGPDSVYSFINNL 377


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 54  AKRTYEILNSELHDELPALYDSRVLFYVNNL 146
           +K TY    ++L D   +L    V  ++NNL
Sbjct: 239 SKNTYNEQGNKLADLYKSLGPDSVYSFINNL 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,928
Number of Sequences: 336
Number of extensions: 1398
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)