Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20233
         (494 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    29   0.087
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    27   0.35 
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    25   1.1  
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    25   1.4  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   1.9  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    25   1.9  
AY187044-1|AAO39758.1|   87|Anopheles gambiae putative antennal ...    24   2.5  
AY070254-1|AAL59653.1|  225|Anopheles gambiae glutathione S-tran...    24   2.5  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   3.3  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    24   3.3  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    23   4.3  
L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7...    23   5.7  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 29.1 bits (62), Expect = 0.087
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 492  GSLATGAGSLTG---VPGSLGSGAVSLTGAGSLFPESVGESP 376
            GS A GAG + G   VPGS    A +  GA S  P  V E P
Sbjct: 3210 GSTAPGAGGVPGVAVVPGSGLPAAAASGGAPSAMPPIVNEPP 3251


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 0.35
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 489 SLATGAGSLTGVPGSLGSGAVSLTGA 412
           S A  A + TGVPGS  +   SLTG+
Sbjct: 163 SRAGSAAAATGVPGSWNTNQCSLTGS 188


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 453 PGSLGSGAVSLTGAGSLFPESVGESPLSAGEG 358
           PGS G G     G GS+    +G S L  G G
Sbjct: 650 PGSGGGGGGGGGGGGSVGSGGIGSSSLGGGGG 681


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 489 SLATGAGSLTGVPGSLGSGAVSLTGA 412
           S A  A +  GVPGS  +   SLTG+
Sbjct: 163 SRAGSAAAAAGVPGSWNTNQCSLTGS 188


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 483 ATGAGSLTG-VPGSLGSGAVSLTGAGSLFPESVGESPLSAGEGGV 352
           A G G  +G V GS   GA  + G GS  PE  G     AG GGV
Sbjct: 516 AGGGGGGSGCVNGSRTVGAGGMAGGGSDGPEYEG-----AGRGGV 555


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 492 GSLATGAGSLTGVPGSLGSGAVSL 421
           G+  TG+G   G  G +GSGA+ L
Sbjct: 92  GAGGTGSGGSGGGSGGIGSGALHL 115


>AY187044-1|AAO39758.1|   87|Anopheles gambiae putative antennal
           carrier protein AP-2 protein.
          Length = 87

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 428 TAPDPKDPGTPVKEPAPVAKE 490
           T PDPKD    V++ A  AK+
Sbjct: 52  TTPDPKDAAKKVEDAAGKAKD 72


>AY070254-1|AAL59653.1|  225|Anopheles gambiae glutathione
           S-transferase E4 protein.
          Length = 225

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 36  REQLEEAKRTYEILNSELHDELPALYDSRVLFYVNNLQTLFSAEQVFHFESSK 194
           +E+++   R YE+LN  L DE   + +   L  ++ + ++ S   +F  ++ K
Sbjct: 130 QEKIDNLYRAYELLNDTLVDEY-IVGNEMTLADLSCIASIASMHAIFPIDAGK 181


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 409 AGSGQRDRTGPQRPR 453
           AG G+ D+TGP R R
Sbjct: 601 AGGGKGDKTGPNRNR 615


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 404 KEPAPVKETAPDPKDPGTPVKEPAPVAKEP 493
           +EPAP K+     K+P    +  + + K P
Sbjct: 92  REPAPKKQAPAKAKEPKAKAERQSTLRKRP 121


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 116 LPGIVLRQQLADALLGRAGLSFRKLQGVRRTRSGNGQ--ASER 238
           LPG  +R  LA     RAG+S +    +R+   GNG   A ER
Sbjct: 441 LPGDQVRSPLACFEWLRAGISGQVFFSLRQQGQGNGSKTADER 483


>L20837-1|AAA03087.1|  192|Anopheles gambiae ribosomal protein S7
           protein.
          Length = 192

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 22  R*RRDANNSKRPNAP 66
           R RRD N  KRP +P
Sbjct: 104 RGRRDPNKQKRPRSP 118


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,429
Number of Sequences: 2352
Number of extensions: 6094
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43977336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)