Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20232
         (545 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.76 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   5.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.0  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   7.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   7.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +2

Query: 239 TARTSMRQLYETLAALLKEYLDGLIDLVAHFAAL-ITDFFEKHKP---ELQEFTNVITDI 406
           +A  + R+LY T A  L+  ++ + DL+A    L + D  EK  P    + ++       
Sbjct: 47  SAAYTNRELYGTRALPLRSAVEHIPDLIADSRRLPLRDAVEKRPPPDEPIDDYEPSFDLF 106

Query: 407 FKDLTRIIVAQVKELPSLIAQSY 475
           +    + +   V+    L+A++Y
Sbjct: 107 YYPSRQTLYTPVQYFKDLVAEAY 129


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 445 GTSFSNSAELQKHCRTN 495
           G  F+ S ELQ+H RT+
Sbjct: 353 GKRFTRSDELQRHLRTH 369


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 192 NTYVETVKKIAELYEKQLEP 251
           NTY E   K+A+LY K L P
Sbjct: 349 NTYNEQGNKLADLY-KSLGP 367


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 192 NTYVETVKKIAELYEKQLEP 251
           NTY E   K+A+LY K L P
Sbjct: 241 NTYNEQGNKLADLY-KSLGP 259


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 168 EPIVESIINTYVETVKKIAELYEKQL 245
           +P+V  ++N    TV  I +   KQL
Sbjct: 197 DPLVALVVNENNTTVNNICQATHKQL 222


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 60  TCSILCGS 37
           TCS+LCGS
Sbjct: 81  TCSMLCGS 88


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 427 NCRSSKGTSFSNSAELQKH 483
           NC   KG    + AEL++H
Sbjct: 48  NCLLEKGKCTPDGAELKRH 66


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/50 (20%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 356 EKHKPELQEFTNVITDIFKDLTR---IIVAQVKELPSLIAQSYRNIVEQI 496
           EK++    EFT  + ++ ++ +R   I   +++ +  +I + + +I  Q+
Sbjct: 163 EKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQL 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,494
Number of Sequences: 336
Number of extensions: 2439
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)