Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20232
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 0.78
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 28 1.0
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 28 1.0
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 1.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 1.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 3.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 5.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.5
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 5.5
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 5.5
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 25 7.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 7.3
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 7.3
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 7.3
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 25 9.6
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.6
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 25 9.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.6
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 0.78
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Frame = +3
Query: 87 TLKELSHAFNEIIQFF----AKIFDTIYKGTEPIVESIINT---YVETVKKIAELY 233
TLKE+S+ ++Q K+ D++ G + + +NT YVET+ ++ +LY
Sbjct: 1590 TLKEISNKDKLLLQSIFLLSRKLQDSVQTGADQALSPEMNTVKKYVETISRLLDLY 1645
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 81 DKTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVESIINTYVETVKKIAEL 230
+K + N+I++ F ++D I P V ++ YVET+ + E+
Sbjct: 439 EKQSMHVDEESNQILEKFLDVYDIIKAKLPPNVAEKVDYYVETIIETPEI 488
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 84 KTLKELSHAFNEIIQFFAKIFDTIYKGT-EPIVESIINTYVETV 212
K +++ +AF+ + A D +YKGT EP+++S++ Y TV
Sbjct: 88 KRFRDVRYAFDRLFGEEASQED-VYKGTTEPLLDSVLQGYNATV 130
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 391 CDHRYIQRSNPNNCRSSKGTSFSNSAELQKHCRTNQRAALLSNLKGEGERS 543
CD + + NP+N + FS+ + LQ H ++ LS L E+S
Sbjct: 261 CDAQELYIMNPSNSYTYANLRFSDCSILQLHSLVEKKYVSLSCLSKPSEKS 311
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +2
Query: 341 ITDFFEKHKPELQEFTNVITDI---FKDLTRIIVAQVKELPSLIAQSY---RNIVEQISA 502
+ + ++HK L+EF N + DI +L + I + K++ S+ A+ I EQ +A
Sbjct: 1000 LNKYVDEHKSRLREFENALWDINSSIDELVKFIEFESKQMNSVKAERIELENQIQEQRTA 1059
Query: 503 L 505
L
Sbjct: 1060 L 1060
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -2
Query: 208 VSTYVLMMLSTIGSVPL*MVSNILAKNWIISLKACDSSFRVLSSVTSW*NLLHSLRKSSS 29
++T V M + ++G VPL + + KN + + K + R+ SSV+ + +SL S S
Sbjct: 401 LNTVVGMDIVSLGKVPLFLTPIVRYKNPVKNKKRSQLTSRISSSVSPSNVIPNSLTSSVS 460
Query: 28 IF 23
F
Sbjct: 461 NF 462
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 211 TVSTYVLMMLSTIGSVPL*MVSNILAKNWIISLKACDSSFRVLSS 77
T+S+ + +L+ + L +++ N +I LK CDS+ L S
Sbjct: 964 TISSLIRSLLAKKKKILLTSFTHLAVDNILIKLKGCDSTIVRLGS 1008
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 36 DFRREWSKFYQEVTD-DKTLKELSHAFNEIIQFF-AKIFDTIYKGTEPIVESIINTYVET 209
+ R +W+KF +EV D +K L S+ F + F + + G +++ I +ET
Sbjct: 597 ELRNQWAKFEKEVEDFEKVLTGGSNGF--MFSFVEGALVKAVRSGHWVLLDEINLASLET 654
Query: 210 VKKIAEL 230
++ I +L
Sbjct: 655 LEPIGQL 661
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 51 WSKFYQEVTDDKTLKELSHAFNEII--QFFAKIFDTIYKGTE 170
WS++ + DD K +H +N I F AK I K E
Sbjct: 144 WSQYNTIIVDDSKTKCAAHPYNHIAVSDFVAKSHSNIPKDIE 185
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 VFRWLDRPRGALRGSDHRFLRKT 363
VF WL PR R H+ ++KT
Sbjct: 217 VFPWLPLPRNRRRDRAHKIMQKT 239
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 392 VITDIFKDLTRIIVAQVKELPSLIAQSYRNIVEQISALPYCLI 520
++ + +++L +I+ E LI ++ ++ +S PYCLI
Sbjct: 575 IVQECWRELDELII----ETNPLIQRATTELINNLSLSPYCLI 613
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 78 DDKTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVESIINTYVETVKKIAE 227
+D +K+ ++A I F +DT K P+ SI+ TY V+ E
Sbjct: 1842 EDPMVKQAAYA---TIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIE 1888
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 227 FRNLFHCLDVRVN-DALHNRLSTFVDGIEYLSEELDYFVES 108
++N+F ++V+ N + TF I+Y+ E D+ VES
Sbjct: 345 YKNVFDLVEVKENFKNFEIPVDTFWSDIDYMYEYRDFTVES 385
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 420 VRSLNISVITFVNSCSSGLCFSKKSVIRAAKCATRSIKPSKYSLSKAAK 274
V+S+ I+V + SS F +KSV+ ATRS K LS +A+
Sbjct: 768 VKSI-IAVANLAKALSSEYTF-QKSVLAGLSAATRSTKDLTILLSSSAR 814
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 9.6
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +3
Query: 6 TAPYFKKIDEDFRREWSKFYQEVTDDKTLKELSHAFNEIIQFFAKIFDTI 155
T P K E + K Y D KE+ HAF EI K+FDTI
Sbjct: 54 TTPGEKAAKEIAQANGVKTYTCKCDVTIPKEVEHAFAEI----QKVFDTI 99
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 359 KHKPELQEFTNVITDIFKDLTRIIVAQVKE 448
KH P+L + D F+++ R + QV +
Sbjct: 199 KHDPQLDAEIRTLQDTFEEVERTLTKQVSD 228
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 60 FYQEVTDDKTLKELSHAFNEIIQFF 134
F+ + D+KT KEL H I F
Sbjct: 174 FFNSIIDEKTRKELPHLTRYYITMF 198
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 15 YFKKIDEDFRREWSKFYQEVTDDKTLKELSHAFNEIIQFFAKIF 146
Y D++ EW + + DD LS+ +Q + KIF
Sbjct: 2245 YMFVFDDELSPEWVEAMNSLLDDNKTLTLSNGERIALQPYVKIF 2288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,956
Number of Sequences: 5004
Number of extensions: 42886
Number of successful extensions: 165
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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