Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20232
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 29 3.2
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 28 4.2
01_01_1050 + 8283589-8283782,8284551-8284814,8284897-8284912,828... 28 5.6
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 27 7.4
03_01_0600 - 4419917-4419967,4420081-4420287,4420386-4420560,442... 27 7.4
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 27 7.4
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24... 27 9.8
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 27 9.8
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 262 LSH*GSSCFSYNSAIFFTVSTYVLMMLSTIGSVPL*MVSNILAKNWIISLKACDSSFRVL 83
+SH S + + + Y++ +G++P M+S IL +S+K+ SF L
Sbjct: 362 ISHDSHSFYILSMISLVALVAYIITFSFGMGAIPWVMMSEILP----VSIKSLGGSFATL 417
Query: 82 SS-VTSW 65
++ +TSW
Sbjct: 418 ANMLTSW 424
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 371 ELQEFTNVITDIFKDLTRIIVAQVKELPS---LIAQSYRNIVEQISA 502
+L E+++ I + K+ + A + E PS +A+S N+VEQI+A
Sbjct: 369 QLSEWSSSILEDIKNADDVAKASIVEKPSEGNTVAESGENLVEQIAA 415
>01_01_1050 +
8283589-8283782,8284551-8284814,8284897-8284912,
8285032-8285389,8285860-8286050,8286108-8286197,
8287399-8287596
Length = 436
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 317 LVAHFAALITDFFEKHKPELQEFTNVITDIFKDLTRIIV 433
L+ L DFF +P+L+ F +V D+ L + IV
Sbjct: 335 LLLDLTRLAQDFFFSRRPDLETFCDVCPDVIVSLQQQIV 373
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 236 ETARTSMRQLYETLAALLK-EYLDGLIDLVAHFAALITDFFEKHKPEL 376
E R + +L+E LK EYL +L +T +KHKP++
Sbjct: 553 EAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600
>03_01_0600 -
4419917-4419967,4420081-4420287,4420386-4420560,
4420677-4420708,4421179-4421280,4421406-4421552
Length = 237
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 138 KIFDTIYKGTEPIVESIINTYVETVKKIAELYEKQLEPQ*DSYTKP 275
K D+IY T + + +E +K EL E QL+P+ S+ KP
Sbjct: 98 KAIDSIYLATRGSIS--MEARLEAARKAEEL-ESQLDPEFPSFVKP 140
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 42 RREWSKFYQEVTDDKTLKELSHAFNEII 125
+R+WS+F + ++ ++E SH F I+
Sbjct: 90 KRQWSRFQLKSLGNRCIREPSHLFESIV 117
>11_01_0031 +
248264-248513,248519-249007,249178-249445,249631-249718
Length = 364
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 457 SNSAELQKHCRTNQRAALLSNLKGEGER 540
SNSAE KH + + L +L G+GE+
Sbjct: 244 SNSAEASKHPQHTALGSFLLSLSGDGEK 271
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 329 SAPRGRSSHLNTP*VRPPRFRITVSL 252
S P SSH++ P RPP R+T+ +
Sbjct: 339 SPPAPSSSHVSRPAFRPPPARVTICI 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,751
Number of Sequences: 37544
Number of extensions: 245576
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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