Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20232
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   29   3.3  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   7.6  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 390 FVNSCSSGLCFSKKSVIRAAKCATRSIKPSKYSLSKAAKVSYNCLIEVRAV 238
           F N     L  S  SV+     AT + KP++ + S    VSY C++ + A+
Sbjct: 736 FSNISDQHLLRSLLSVVAMTTNATTTTKPTRMTTSSIILVSYLCIVIITAL 786


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = +3

Query: 3   KTAPYFKKIDEDFRREWSKFYQEVTDDKTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVE 182
           +T   F +   + R   S+  Q V D +T  +  H   EI++   K+  T+ K +E   E
Sbjct: 697 QTGNLFGETLTNLRENLSQTRQMVIDSRT--QFKH---EIVKALEKLSSTLKKASELTQE 751

Query: 183 SIINTYVETVKKIAELYEKQ 242
                Y + ++++ + Y+K+
Sbjct: 752 RTSKEYKKILREVTDKYDKE 771


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 379 GIHECDHRYIQRSNPNNCRSSKGTSFSNSAELQKHCRTN 495
           G+H+C+H+        +C  S G + ++  +  K C+ N
Sbjct: 586 GLHKCEHQCNNTFGSYSCSCSPGFALADDKKSCKACKDN 624


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 69   EVTDDKTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVE--SIINTYVETVKKIAELYEKQ 242
            E T + TLK     FN+++    +  ++    T+ + E   ++  Y+E ++  A++Y+KQ
Sbjct: 954  EATPNSTLKY----FNQLVTIDTQSSNSTLLSTKSLAEVKQMLRVYLEHMENYADMYKKQ 1009

Query: 243  LE 248
             E
Sbjct: 1010 SE 1011


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,695
Number of Sequences: 59808
Number of extensions: 301645
Number of successful extensions: 1137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)